Gene detail

Detailed information of Actinostola_04604 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_04604	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	scaffold416_size396942	322405	369791	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_04604

ATGAAAGAAGAACAAGATCGTAAGATATCTGAGAACAGGCCCAAATTTGGACACGTTGAAGAGATTACAAGCAGTGAAAACTTTCTGCAAGTAATTGACAAGGAACGTCTTCATGTAGTGATTGTCATTCATCTATATAATAAGGTCAAATTCTGCAAAATAAAAGCAGAGCTCACAGGAATCAGTGCAAACTTTATAAACAATGGTCTTCCTGCTCTACTGGTTTACAAAGGAGAACAAATGGTGGGAAACTTTGTACAACTTGAAAATGTGTTGGGAGATAACTTTGATTCAAGTGATGTAGAAAGCTTTCTTATTCAGAAACCTGAAAAGGGAATTGATTATCTCATATCTCACCAAGTACTAGAGGACAATCCACAAGTAGTTGCAAAGTTCCTGATCTCAGAACATGGCATCAGTAAACAAAGACTAGGAGAATACATGGGAAATATTCAAACAGATTTCAACATGGCAGTGCTAAATGACTCTTTCTTGGAGGAAATTGTACAAGAATCTTCCACAATGAATATTCTTAATAGAGAAGTACGATATTCAAATTCATCCCAAGATTCATTAGCGGACCTTCAGCCTCGCATCATCACCTCAAGACAAAAAGACAACCGTGGCCTTCTAATCCTGCATTTGAACGTGAATAGCTTACAGAATAAATTTGAAGAGGTGCAATCTTTAATTCAACACGATTTTCGAGCGCAAGTGGCATTGTTGTCAGAAACCAAAATAGATTCTTCGTATCCCAACAGCCAGTTTAAAATAGAAGGATACAATATGTACCGCAACGACAGAACCAAAGGAGGTGGAGGTGTTTTGGCCTATTTTTCTTCTAGATTACCGTCAAAAAAATTAAAACTCCCAAGAAAGTTCACCACAATTGAACCACTTGTAATCGAATCTAAATTTGGCAGTCATGATGTGGTGGTTTTATTAATATACAGACCCCCGAAGGCATCTGGCCAAGACTACTATCTTCGACTGGAAAAGGATCTCTATGACATTGCTACATGGGCATCTCTTCAGAAGCAGTTTCTTGTCATAGCCGGCGATCTAAACATGGATCGACTAAGACCAAACTACAGAGAAGGTAAAATCTTGTGTGACCTGGAAGATGTACTGGGACTAACCTGTTTAATAGATAAGCCCACCAGAATTACAGAGAGTAGTCAGACACTGATTGATGTCATCCTCACTAATAAACCTCATCTCTTCAAGGATAGTGGAGTCTATAACCCTGAAATCAGTGACCATGCGCTGGTATATGGTCTCATGACCGAAAACGCCATTCTTCATCCTAGCAACATTATCTCCAGATCATTCAAGAACGTTAATGAGGATGATCTTCGTCAGGACTTGCAATCTGCACCATGGCATGTTGCTGAAATATTCGATTCTGTAGATGACCAATACTCTTACTGGAACGATCTGTTTAATACCATCTTACACGATCACGCACCCATCAAAAAGATGAAAGTCAGAGTAAAGGATGTGCCTTACATGACGATGGAGTGGAAGCATGCTATAAGAAAAAAGCGCAGATACGCGAAAAGATATGCAAGCAATCCTACGTGTGAGAACTATAGAGAGAAAAACAAATGGAGAAATTTAGCAACCAAGCTCAGACGCAAGGCGATAAAGGAATATTGGAAAGAAAAGACGGAAGACCTCAGCAACAATCCGAGAGCGTTCTACAAAGTATTTAAACCCTTCATCGATACCAAGAGCCAAGGAACTGATAATGGTGTAATCAACCTGGAGGTCAATGGAAACATCTTGAAAGACCAAACTGAAGTAGCTAATAATTTTGCAAACTATTTCGCAACAGTGGCCAATGATATTGGTGACACTCAAACACTATCGCTCTCAAAAGAACAATTGAAAGATCACACCAGCGTACATGTTATAAAAGACAAAACAAGAATAGTCAATGGCCCACAATTTGAATTCAGCCAATTCAACGTAGCAGAAGTAGCCAAAGTACTTAAGGCAGTGAACCCTAAGAAAAGCATGGGGCATGATCTGATACCCCCTCAAGTTCTCAAGATGTCAAGTGATGCACTGGCGCCTTCACTGACCAGCATATTCAATGCATGCATTAAGATCAATTGCTGGCCCTCACAATGGAAGAAAGGTATCTGGGTACCTGTGTTTAAGAAAGACAATCATTTGGATGTCAAGAACTATAGACCCATTACATTGTTGAGTGCCATAGACAAAGTCTTCGAACAACTAATAAGCCACCAAATATCAAACTTCATGGAGCCCCGTCTTTGCAAGACCATGACTGCGTACCGGAAGGGTCACAGTTGCGAAACAACTCTAATTGCTCTGGTAGAAGAATGGAAAAAAGCTGTTGATGATAAGGGCATGGTAGGGGTGTTATCGACTGATATGTCAAAAGCCTTTGATTCCCTTCACCATCCCTTACTACTAAGTAAACTGGAAGCCTATGGATTTTCTTCTGATGCTACTTCTCTTCTTCAATCTTACTTCCTTGATAGACATTGCAAAGTGAGAATCACTACAGACTCTACTAGTGATTGGATCGAGGTCAAAAGAGGTTGTCCGCAAGGGTCCAATCTTGGCCCACTGCTCTGGAACGTTTTCCAGAATGATTTATCATTCAGTGTTAACAAGGGAAAACTAATGATGTATGCTGATGATCATCAACTCTATACTACTGGGAAGAACGTCAACGAAGTTCAAAGTACTCTTAACGAAGAAGGAAAATCTATATCTGGTTGGTATCAGACCAATCAGCTACAAGGAAATCTTACGAAATATCAAGTGTTGAACATCGGTCCTAAGCAACAGGATAAAGTTCTGGACGTCACAATGATGAACACATGTATCAAACAAGATAAGGTGATGAAATTACTTGGAGTGTCCATAGATGAGAACCTGGACTTCAGTCATCATATGTTTTCAGAGCAATACCTCTACTGTAATCCTACTGAAGACAAGGCAGCTCAAGACAAGGTCTTAATCCTAGCATTTGCTATTGTAATGCTAAACACTGATCTGCACAGTCCTAATGTCAAGAAAAAGATGACGGAGGCTGATTTTATAAGAAACCTTGAAGGTATTCAGCATAACTGGCACTTCACAATCTCACCAAACAAACTAAAGTTACCACGGAAACATGCTCAGTATGATAATACTAAACCCATATTTTAA

Transcript

Actinostola_04604

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF01369	Sec7	Sec7 domain	Domain	Interproscan
PF02114	Phosducin	Phosducin	Domain	Interproscan
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR000904	Domain	Sec7 domain	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR023394	Homologous_superfamily	Sec7, C-terminal domain superfamily	Interproscan
IPR024253	Domain	Phosducin, thioredoxin-like domain	Interproscan
IPR035999	Homologous_superfamily	Sec7 domain superfamily	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33395	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0032012	Biological Process	regulation of ARF protein signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-