Gene detail

Detailed information of Actinostola_05046 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_05046	ATPASE E1	scaffold468_size316579	133340	167032	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_05046

ATGGTTTCTTACGACTATTCCCTGAATGCAAAGAGTTATATCGATCAGTTCAGTCACGCAGTTCAGGAGCCCTGTGTTCTAGTTATCCCGTCACGCATTGCGAGCTACTCATTTTCCAAGATGGCGAACAAACGTATGGTTTATGTTGGAGGCTTGGCCGAAGAAGTGGACGAAAAGGTTCTTCATGCGGCTTTTATTCCATTTGGAGACATCACAGACGTTCAGATACCTCAGGATTACTCTACACAAAAACATCGAGGCTTTGGGTTCGTGGAATTTGAGTTTGCGGTAGATGCTGCTGCAGCCATGGACAATATGAACGAAGCGGAATTGTTTGGTCGAACAGTTCGAGTAAACATTGCGAAACCCATGAAAATCAAAGAAGGATACAGCAGGGCTGTGTGGAGCGAGGATAACTGGCTTCAAAAATATGCTGGACAAAAGGACGAAGAGAGTAAAGAGAACGGGACAGCTGAACAGACGCAAGAGTCAATGGAGACGGAGACCGCACCGAAAAAGAAAGGCAATCCACGTGTTTACTTTGACATTAACATTGCGGATCGAAGTGCGGGACGAATCGTCTTCATTTTACGCTCAGATGTTGTTCCTATGACGGCGGAAAACTTCCGTTGCTTGTGTACCAACGAGAAAGGGTTTGGCTACAGTGGTTCTACGTTTCATCGTGTTATACCACAGTTCATGTGCCAAGGGGGTGATTTTACTAAGCATAATGGCACGGGTGGGAAATCCATTTATGGCCCCAAATTTGAAGATGAGAATTTTGTTCTCAAACATACAGGACCGGATGTGGCATTTCAAATTGGTGATTCTGCTTCTAAATATCTCGTCCTGCAAGTACATTATGGTATTGTTGATAAATTTAAGATTTATAGTCTTAATCTGGCTTGCAAGTATCAAAACCCAGCTGTCATTCATCCTTTCGCTTTCAGAGTTCACGCACACTCACTCGGCTCCGTGATTACTGGTTACAGGGTACGTGGTAATCAATGGACCTTGATTGGCAAGGGAGATCCTCAGCGACCACAGGACTACATACATATGTACTACAGCGAGTGGGTTACCTGTGGTCAGGGTTTCTATGGCAAGTGGGTTACCTGTGGTCAGGGTTTCTACAGTGAGTGGGTTACCTGTGGTCAGGGTTTCTACAGTGAGTGGGTTACCTGTGGTCAGGGTTTCTACAGTGAGTGGGTTACCTGTGTCCTGGGTTTCTATGGCGAGTGGGTTACCTGTGTGCAGGGTTTCTACAGCGAGTGGGTTACCTGTGGTCAGGGTTTCTACAGCGAGTGGGTTACCTGTGGTCGGTTTCTATGGCAAGGTTTCTACGGTGAGTGGGTTACCTGTGGTCAGGGTTTCTACAGTGAGTGGGTTACCTGTGTGCAGGGTTTCTACAGCGAGTGGGTTACCTGTGGTCAGGGTTTCTACAGCGAGTGGGTTACCTGTGGTCAGGGTTTCTATGGCAAGTGGGTTGTCTGTCCTGAGTTTCTATGGCGAGTGGGTTACCTGTGTGCAGGGTTTTTCTTCAGCGAGTGGGTTACCTGTGGTCAGGGTTTCTACAGTGAGTGGGTTACCTGTGGTCAGGGTTTCTACAGTGAGTGGGTTACCTGTGGTCAGGGTTTCTACAGTGAGTGGGTTACCTGTGGTCAGGGTTTCTACAGTGAGTGGGTTACCTGTGGTCAGGGTTTCTACGGCGAGTGGGTTACCTGTGTTCAGGGTTTCTACAGTGAGTGGGTTACCTGTGGTCAGGGTTTCTACGGCGAGTGGGTTACCTGTGTTCAGGGTTTCTACAGTGAGTGGATTTCTACCTGTGGTCAGGGTTTCTACCTGTGGTCAGGGTTTCTACAGCGAGTGGGTTACCTGTGGTCAGGGTTTCTACAAGCAACAATGAAGGATGAAATGTGCAACTTTTACATGATGTTTTACTACGATCCCAAGAATTCACAAGGTTCTCCTGAAGACTCTTGTGGCTACGCAAATGTCAACCCTGCAGCATACCCAGCAGATTCAGAGGTACCCCTCCCTGGCAGTGGACAGAAGATGGAAATGAAAAGAGATGAAGGTCCTGCTCCACATAACTTCATGGTTCCTCACAGTGTCTCCATTGACAAGTCCAAAAATCGACTGTATGTCGCTGATCGTGAGAATGGGCGGGTATTAGTCTTTGATACAAGAACTGGAAAACTTGATAAGGATAAGGACGTTATCACTGGTTTTGGAGGTCGTGTCTTTGCAGCTCATTATTCTTCTGCTAATGGTAAGGAGAGAGAATATCCCTCTTTACTCTTGACATTACTTACTACAGAAGAGAGCCAGGAAGCATGGCAACATCATTCCCTCTTACACATTCGCTATGCTAAAGTAGCCCAATAA

Transcript

Actinostola_05046

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00160	Pro_isomerase	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF03712	Cu2_monoox_C	Copper type II ascorbate-dependent monooxygenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR002130	Domain	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR008977	Homologous_superfamily	PHM/PNGase F domain superfamily	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR014784	Homologous_superfamily	Copper type II, ascorbate-dependent monooxygenase-like, C-terminal	Interproscan
IPR020892	Conserved_site	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	Interproscan
IPR024548	Domain	Copper type II ascorbate-dependent monooxygenase, C-terminal	Interproscan
IPR029000	Homologous_superfamily	Cyclophilin-like domain superfamily	Interproscan
IPR034168	Domain	Peptidyl-prolyl cis-trans isomerase E, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48037	ATPASE E1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000413	Biological Process	protein peptidyl-prolyl isomerization	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003755	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0016715	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-