Gene detail

Detailed information of Actinostola_07845 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_07845	SCAVENGER RECEPTOR DOMAIN-CONTAINING	scaffold94_size654149	385391	434680	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_07845

ATGAACAGACCTTATTCTTGTTTTGTGCTAAAACAAAACATAGAGGAAAAAGCGATCACTGTTCGTCTGGTTGGAACTAATGTAAGCCATGTTGGCCAAGTGGAAATCCAATATCAAGGGACCTGGGGAGCAGTTTGTGGAAGTTATTACAGTGGCTGGGATATACGAGATGCTCACGTGATCTGTCGAATGCTTGGTTACAAAGCAGCCGAATCAGCACTTCAAGACATCGAAGGACAGACAACAACAAGAATACTCATGGACAATGTGCAATGTACTGGTAAAGAAAAGTCTATTGCAGAGTGTGCTCACTTCGGATGGTGGAGTGTTGGTTGTTCGTATAAATATCTTGCTGGTGTGGTTTGTCAGGTAGACGTCGAAGCCGCAGCTCCTCAGTTTACAGTAAACAGCTCATCTGACAAACGGTCGTGTACTGCGACGCTCCGCATCATCGACCATGCAGCAAGAAACGCCAAAGAAAAACAGTTAATAAAATTTTATGAAATACGTACGAACAAAGTTGGACAATCTTCGTCGTGGGTCCTTGAAATTGATGGTATTCATAGCTTTACGATTGGTGATGGTAAGTACTACAATGGTTCCCACAACTTACCGTTAGAGCCTGGGACTACGTACAATGTTTCAGTGAGGGCTGTGACCAAGGCACAGAATGGGGGCAAAGGTTATGGGGAGACGGCAAGTAAGACTTTTACAACAAGCAGAAACTGCACAAATGCAGAAGGTAATGCAGAAGAGGAAAAAGCGATAACCGTTCGTCTGGTGGGAACTAATGTAAGCCATGTTGGCCAAGTGGAAATCGAATACAATGGGACATGGGGAGCAGTCTGTCTTTATAACTGGGATATAGAAGATGCTCACGTGATCTGTCGAATGCTTGGTTACAAAACATCTGAAAGACCAATTTGGTACATCGAAGGAGAGACAACAACAAAAAAACTCATGGATCGGGTAGACGAAGATCCTCCACCAGTTCAAGTTCGTTTAGCTGGAGGAAGGTCACCCAATTCTGGTCGAGTTGAAGTCAGGTACCATGGTGCGTGGGGTACTGTTTGTAACGGTGGATGGGACGCGAACGACGCTGAGATGGTTTGTCGTATGCTTGGTTACACTGGAGTACAGAAGTCCATAACCACAGAATTTAGCCCCGTGAAAGCCGCAGCCCCTCAGTTTACAGTAAGCAGCTCATCTGACAAACGGTCGTGTACTGCGACGCTCAGCATCATCGACCATGTAAAAAGAAACACCAAAGAAAAAGAGTTAATAAAATTCTATGAAATACGTACGAACAAAGTTGGACAATCTTCGTGGGTCCTTGAAATTGATGGTATTGATAGCTTTACGATTGGTGATGTTAAGTACTACAATGGCTCCTACAACGTACCGTTAGAGCCTGGGACTACGTACAATGTTGCAGTGAGGGCTGTGACCAAGGCACAGAATGGGGGCAAAGGTTATGGGGAGACGGCAAGTAAGACTTTTACAACAAGCAGAAACTGCACAAATACAAAAGAGAAGAAAGCTGCTGTCGAAGTTCGTTTAATGGACGGTAAAACTGCACACGATGGTCGTGTAGAAGTGAGAAAAAATAACGGTCAATGGAGCACGATATGTAATACATACTGGGACTTACGAGAAGCTTATATGGTGTGTCACATGTTGAGTTACTCCAAGGCAGTGTCAGCTGGTACTGCTAACGTCAAAGGAAGTGGTCCTATTTATCCTAAATGGCTGAGTTGTGATGGACATGAAACGTCTATTGAGCAGTGCCGTCAATATTATCATAGCTGTGATCACAGTCGAGATGCTGCAGTTGTATGTGGGAATCTGACACCAGAGGAAAAAGCGATCACCGTTCGTCTGGTGGGAACTAATGCAGTGTCAGCTGGTACTGCTAACGTCAAAGGAAGTGGTCCTATTTATCCTAAATATCAGAGTTGCGGTGGATATGAAACATCTATTGAGAAGTGCAGTCAATATTCTCGTAGCTGTGATCATAGTCAAGATGCTGCAGTTTTATGTGGGAATCTGACACCAGAGGAAAAAGCGATCACCGTTCGTCTGGTTGGAACTAATGTAATCCATGTTGGCCAAGTGGAAATACAATACAATGGGGCATGGGGAGCAGTCTGTTCTTGGGACTGGGGTATAGAAGATGCTCACGTGATTTGTCGAATGCTTGGTTACAAAGCTGCTGAAAGACATATTTGGCTCATTGAAGGAGAGACAACAACAAGAATACTCATGAATTATGTGGGATGCAGTGGTAAAGAAAAGTCGATTGCAGAGTGTGCTCACTTGGGATGGTGGAATGTAGGGTCTTATTGCACGTATAAAGATCTTGCTGGTGTGGTTTGTCAGATATACGAAGATCACCCACTTGTTCAAGTTCGTATAGCTGGAGGAAAGTCACCCAATTCTGGTAGAGTTGAAGTCAGATACCATGGTGTGTGGGGTACTGTATGTAACAGTGGATGGGACACGAACGACGCTGAGGTGGTTTGTCATATGCTTGGTTACACTGGAGTACAGGAGTACAAAACCACCAAATTTAGACCCGTGAAAGCCGCAGCTCCTCAGTTTACAGTAAGCAGCTCATCTGACAAACAATCGTGTGCCGCGACGCTCCGCATCATCGACCATGCAGCAAGAAACGACAAAGAAAAAAAGTTAATAAAATTTTATGAAATACGTACGAACAAAGTTGGACAATCTTCGTCGTGGGTCCTTGAAATTGATGGTATTCATAGCTTTACGATTGGTGATGGTAAGCACTACAATGGTTCCTCCTACAACGTACCGTTAGAGCCTAGGACTACGTACAATATTGCTGTGAGGGCTGTGACCAAGGCACAGAATGGGGGCAAAGGTTATGGGGAGACGACAAGTAAGACTTTTACAACAAGCAGAAACTGCACAAATGCAAAAGAGAAGAAAGCTGCTGTCGAAATTCGTTTAATGGACGGTAAAACTGCACACGATGGTCGTGTAGAAGTGAGAACAAATAACGGTCAATGGAACACGATATGTAACTACCAATGGGACTTAGTAGACGCTTATGTGGTGTGTCGAATGTTGAATCACCTCAAGGCAGTGTCAGCTGGTACTGCTAACGTCAAAGGAAGTGGTCCTATTTATCCTAAATGGCTGGCTTGCGATGGACATGAAACATCTATTGAGCAGTGCCGTCAATATTCTGTTAGCTGTGATCACAGTCTTGGTGCTGCAGTTGTATGTGGGAATAGTCTGACACCAGAGGAAAAAGCGATCACCGTTCGTCTGGTGGGAACTAATGTAAGCCATGTTGGTCAAGTGGAAATCCAATACAATGGCGCCTGGGGAGTAGTCTGTCATTATAACTGGGATATGCGAGATGCTCACGTGATATGTCGAATGCTTGGTTACAAAGCAGCTAAAAGACCAATTTTGAGCATTGAAGGAGAGACAACAACAAGAAAGCTCATGGATTATGTGGGATGCAGCGATCCTCCACCAGTTCAAGTTCGTTTAGCTGGAGGAAGGTCACCCAATTCTGGTCGATTTGAAGTCAGGTACCATGGTGTGTGGGGTACTGTATGCGACGATGAATGGGACACGAACGACGCTGAGGTGGTTTGTCGTATGCTTGGTTACACTGGAGTACACGAATCAATAAACACCAACTTTAGCCCTGCCAAAGGTATAATATGGATAACTAACCTTGGTTGTGGTGGTACAGAAATGTCCATTGCTAAATGCAGCCATTATGGATGGGGAATCACAGGCTGTACGCATATCGAGGACGTTGGTGTCACGTGCAAGATGGCCGCAACCCCTCAGTTTACAGTAAGCAGCTCATCTGACAAACGGTCGTGTACTGCGACGCTCCACATCATCGACCATGCAGCAAGAAACGCCAAAGAAAACAAGTTAATAAAAAAGCTGAAAGACGATAAGGTTCGCGATCACGATCATTTTACGGGCTTGTATCGGGGCGCAGCACATGCGGTTTGCAACTTGACCTATAGAATTCCCAAACACATTCCCGTGATTTTCCATAATTTGGCGGGATACGATGCTCATTTGTTTATAAAGAGTTTGGGATTTTCTGAAGGTAAGATCGATTGCATTCCCAACAATGAAGAGAAATACATTTCCTTTAAAAAGAAAATTGTGGTGGACAGTTTTTTCAAAAATGGTAAAAAAATATTCATCAAGCGCGAACTTCGATTCATTGACAGCTTCAAATTCATGTCTTCTGGGTTGGACAAGCTGGTGGGAAATCTAAAGAAAGAACAGTTCATAAACACGTCCAAGTTCTTCGAAGGTGAGGAATTAGATTTGTTGTTGAGAAAGGGAGTGTATCCCTACGATTATATGAATTGTTTGTCCAAGTTAGACGAGACCGCGCTTCCCAAGAAGGAAGAGTTCTTTTCCAAACTCAACGATGCGGATATTTCAGACGAGGATTATCAACATGCGCAGAACGTCTGGAAGGTGTTCGAAATGGACACTATGAGAGATTATCATAATCTGTATCTTCTTTCTGATGTTCTTTTGTTGATGGATGCGTTTGAAGCTTTTAGAGACGTGTGTCTGGAAAACTACACGCTGGATCCGTGTTGGTATTACACCGCACCAGGATTGTCTTGGGACGCTATGTTGAAGATGACCCGGATTCGGTTGGAACTTCTGACGGATGTGGACATGCTTTTGATGGTGGAAAAAGGGATCCGCGGTGGTGTGAGTATGATTAGCAAAAGGTATGCCCAAGCCAATAATAAATACATGAAAGATTACAAAAAGGAAGAAGACTCTGTCTTTATTAAATATTTGGACGCCAACAATCTTTACGGTTGGGCTATGTCGGAGCCTCTTCCTACTCACGGGTTCAAATGGATGAGTGCCAGCAAGTTGCGTTGTTGGGAAAAATATTCGTGTATTTTAGAAGTGGATTTGGAATATCCTGAGGAGTTGCACGCATTGCACGACGAGTACCCTTTGGCTCCAGAACATTTGGTGTTGAGCAAAGTGGGGAAGTTGGTGCCGACGACTCGAAACAGAACTAAATATGTGGTGCACCATCACACTTTGAAGTTGTACGAGAGTCTGGGGATGAAGATCACCAAAATACACAGAGGCATTGTCTTTCACGAATCGGACTGGTTGAAAAAATACATACACTTGAACACCGAACTTCGAACGGCGGCCAAGAATGATTTTGAAAAGGATTTCTTTAAGTTGATGAACAACAGCGTGTTTGGCAAAACTATGGAAAACATCCGTAATCGGCAAGACATCAAACTCATCTCTACAGAGAAACAAGCGGCCAAGCTAGTTGCGCAGCCTAACTTTTATCGTAGAACTATCTTTTCAGAGCATCTTTGTGCGGTTCACATGAGAAAAACAGAATTGGTCTTCAACAAGCCTGTCTATTTGGGGATGTCCATCCTTGATCTGTCAAAATCTCTCATGTATGATTTTCACTACAACTATTTTAAGAAGAAATTCAAGACTTCAGAACTGTTGTTTACTGATACAGATTCGTTGATGTATGAGATCAAAACAGAAGATTTCTACAAAGACATTCAAGAGGATGTTTTAGAAAGATTTGACACCAGTGCTTATTCTAAAGAGCATCCTATTGGTGTTTGGGTGAATAAGAAAGTGATTGGTAAGATGAAAGACGAAACGGCTGCAGAAGGTGAAATAACCGAGTTCGTCGGACTGAGAAGCAAATTGTATGCTTACAAAACAGAAGAGAAAGAGGAAAAGAAATGCAAAGGGATTAAAAGGTCGGTGGTCAAGAAAGATCTGGACTTTGAAGATTATAAGACGTGTCTGTTTTCTGGGGCCAAAGTCTTTCGAAAGATGAACGTGATTCGAAGTTACAAGCACCAGCTCTTTTCAGAAACAGTCCATAAAGTAGCGTTGTCCAGAGAAGACGACAAAAGAATCATTCTTGCAGATCAAATTCACACCCACTCTATCTGA

Transcript

Actinostola_07845

Protein

Actinostola_07845

MNRPYSCFVLKQNIEEKAITVRLVGTNVSHVGQVEIQYQGTWGAVCGSYYSGWDIRDAHVICRMLGYKAAESALQDIEGQTTTRILMDNVQCTGKEKSIAECAHFGWWSVGCSYKYLAGVVCQVDVEAAAPQFTVNSSSDKRSCTATLRIIDHAARNAKEKQLIKFYEIRTNKVGQSSSWVLEIDGIHSFTIGDGKYYNGSHNLPLEPGTTYNVSVRAVTKAQNGGKGYGETASKTFTTSRNCTNAEGNAEEEKAITVRLVGTNVSHVGQVEIEYNGTWGAVCLYNWDIEDAHVICRMLGYKTSERPIWYIEGETTTKKLMDRVDEDPPPVQVRLAGGRSPNSGRVEVRYHGAWGTVCNGGWDANDAEMVCRMLGYTGVQKSITTEFSPVKAAAPQFTVSSSSDKRSCTATLSIIDHVKRNTKEKELIKFYEIRTNKVGQSSWVLEIDGIDSFTIGDVKYYNGSYNVPLEPGTTYNVAVRAVTKAQNGGKGYGETASKTFTTSRNCTNTKEKKAAVEVRLMDGKTAHDGRVEVRKNNGQWSTICNTYWDLREAYMVCHMLSYSKAVSAGTANVKGSGPIYPKWLSCDGHETSIEQCRQYYHSCDHSRDAAVVCGNLTPEEKAITVRLVGTNAVSAGTANVKGSGPIYPKYQSCGGYETSIEKCSQYSRSCDHSQDAAVLCGNLTPEEKAITVRLVGTNVIHVGQVEIQYNGAWGAVCSWDWGIEDAHVICRMLGYKAAERHIWLIEGETTTRILMNYVGCSGKEKSIAECAHLGWWNVGSYCTYKDLAGVVCQIYEDHPLVQVRIAGGKSPNSGRVEVRYHGVWGTVCNSGWDTNDAEVVCHMLGYTGVQEYKTTKFRPVKAAAPQFTVSSSSDKQSCAATLRIIDHAARNDKEKKLIKFYEIRTNKVGQSSSWVLEIDGIHSFTIGDGKHYNGSSYNVPLEPRTTYNIAVRAVTKAQNGGKGYGETTSKTFTTSRNCTNAKEKKAAVEIRLMDGKTAHDGRVEVRTNNGQWNTICNYQWDLVDAYVVCRMLNHLKAVSAGTANVKGSGPIYPKWLACDGHETSIEQCRQYSVSCDHSLGAAVVCGNSLTPEEKAITVRLVGTNVSHVGQVEIQYNGAWGVVCHYNWDMRDAHVICRMLGYKAAKRPILSIEGETTTRKLMDYVGCSDPPPVQVRLAGGRSPNSGRFEVRYHGVWGTVCDDEWDTNDAEVVCRMLGYTGVHESINTNFSPAKGIIWITNLGCGGTEMSIAKCSHYGWGITGCTHIEDVGVTCKMAATPQFTVSSSSDKRSCTATLHIIDHAARNAKENKLIKKLKDDKVRDHDHFTGLYRGAAHAVCNLTYRIPKHIPVIFHNLAGYDAHLFIKSLGFSEGKIDCIPNNEEKYISFKKKIVVDSFFKNGKKIFIKRELRFIDSFKFMSSGLDKLVGNLKKEQFINTSKFFEGEELDLLLRKGVYPYDYMNCLSKLDETALPKKEEFFSKLNDADISDEDYQHAQNVWKVFEMDTMRDYHNLYLLSDVLLLMDAFEAFRDVCLENYTLDPCWYYTAPGLSWDAMLKMTRIRLELLTDVDMLLMVEKGIRGGVSMISKRYAQANNKYMKDYKKEEDSVFIKYLDANNLYGWAMSEPLPTHGFKWMSASKLRCWEKYSCILEVDLEYPEELHALHDEYPLAPEHLVLSKVGKLVPTTRNRTKYVVHHHTLKLYESLGMKITKIHRGIVFHESDWLKKYIHLNTELRTAAKNDFEKDFFKLMNNSVFGKTMENIRNRQDIKLISTEKQAAKLVAQPNFYRRTIFSEHLCAVHMRKTELVFNKPVYLGMSILDLSKSLMYDFHYNYFKKKFKTSELLFTDTDSLMYEIKTEDFYKDIQEDVLERFDTSAYSKEHPIGVWVNKKVIGKMKDETAAEGEITEFVGLRSKLYAYKTEEKEEKKCKGIKRSVVKKDLDFEDYKTCLFSGAKVFRKMNVIRSYKHQLFSETVHKVALSREDDKRIILADQIHTHSI

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00530	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001190	Domain	SRCR domain	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR017448	Domain	SRCR-like domain	Interproscan
IPR023211	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR036772	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052291	Family	Scavenger receptor cysteine-rich domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19331	SCAVENGER RECEPTOR DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-