Gene detail

Detailed information of Actinostola_11749 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_11749	TYROSYL-DNA PHOSPHODIESTERASE 1	scaffold201_size493891	52510	61817	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_11749

ATGGCAACCATTATAACTCCGCAGTTAGTTACCCTACAAATCTCTAATAATGTCACGTCATTTGTGTCTGAAAAAAGATTTGAAAAAGGCATCACAATCTCTGTATTGAAGGGTAAATTAGAGATGATTACAGGATGCCCCGCTATGTCAGTAGAACTCCAGCTATTTGATAAAGACGGCAATTTAATCGTAACAATGGCTGATGATAATGCTTTATTTGGTTCATACCCAGTAGAGGACCAAATGAGAATACATGTTATTGACAAAGATCCAAAGAAAAGTGCTGGTGATTTTGAAGATTTGTCAAAAGTGGAAAAATATGAGATGAGTGAAGACAGCTACAGTAAGAAATCAGATTCTGTCAGAGCTTTCAAACTGAGAAACAAACTTGGGAGGTTTGCACCAACAACACCAGAGGATGAGGAGAAACAGAAAGAAATGGAAAAACAAGAGCAAGAACAGGCAGAATCAATTACCATTGGATCACGATGTGAAATAAAAACTGCCAAGACAGGAGTGAAACGTGGAGAGGTCATGTTTGTGGGGAAAACGGACTTTAAGCCTGGTTATTGGGTTGGAGTTAAATACGATGAACCACTAGGAAAGCATGATGGAAGTGTTGCAGGCAAAAGGTACTTCACTTGTCCCAATAAATATGGTGGCTTTGTGAGGCCTAAAGATATTGTCATTGGCAACTTTCCTGAAGAGGATCTTGGTATCGAGTCTGATGAAGATGAAATTGACGATGAAGACAGTCCTCCAAAAAAGAGACAAAGAAGCACAAGTCCTCATAACGTTTCTAGTTCACCAGGTTCTAGTACAACTACTTCAACTCACAGCAGTGAAAACAAGCTGTCTTTTTATTTGACTAAAGTCAGAGGGATACCAGCTAAATACAACAATGATACACTTGCTATAGGGCTAAAAGTTAAAATCATTTTTCCATATTTTATTTTCAAGTTCAATTATATGTTTGATATACCATGGTTGATGCAACATTACCCTCAAGATAAGAGATCCAAACCATTATTAATTATACACGGAAGCCAAGGACATGCGAGAACTGAACTGATGAATGAGGCAGAGGACTTTCCAAACATCAAGTTTTTCCAGGCCAGACTGGAAGCATATGGAACTCACCACAGGGTGTGGATTAGTCCTAAATTCCCTAAGCTTTCCTCTGGTGCAGAGTCTTTTGATTCTCCTGTTCCTTCAGCATCACAGCATCCAGCTAAAACCAATACAAATTTCAAGAAAGACTTACTGGAATACTTGTGTGCCTATAGTGGGACAGCACTAGATGAATGGAAGAAACACATTCGCCAACATGACATGTCATCTGCAAGAGTACGTCTAATCGCCTCTGTACCTGGCCGTCATACTGGACCAAGTAAAACAAAATGGGGACACTTGAAATTAAGAAAGGTCCTACAAGAGAGTGGGCCGGCGTCAGCAGACGTTCCACAAACCTGGCCTGTCATTGGACAGTTTTCAAGTATAGGTTCCCTTGGTAACGATAAAAACAAATGGGTGTGTGCTGAATGGCTTCAAAGTATGGCAGCCTCTTCAGGCAGAACCATTGGATCCAACTCACCATTGAATCTGGTGTTTCCAACTGTTGATGATGTTCGATTGAGTCTCGAAGGATATCCAGCTGGTGGATCCATACCATACAGTCACAAAACAGCAGTCAAGCAGCCTTGGCTTCCATCGTTTTTATGTCATTGGAAGTCTACCACCCACGGCAGAACCACGGCATCTCCTCACATCAAATCTTACACTAGAATCTCACCTGATGCAAGCAAACTCGCATGGTTCATGGTTACAAGTTCTAATCTGTCAAAAGCAGCCTGGGGAGCAATGGAGAAGAATGGATCCCAGTTGATGATTCGTTCCTATGAGATTGGTGTGCTGTTTTTACCCAAGGACCAGGACCCAAATCTAAGCTTCTTTTCTGTAAATGGACACGCGGCGGGATCAAAGACAAGTATATCAGTCACAGTTCCCTTCGATCTGCCAGTCACGCCTTACTCCAAAGAG

Transcript

Actinostola_11749

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01302	CAP_GLY	CAP-Gly domain	Domain	Interproscan
PF06087	Tyr-DNA_phospho	Tyrosyl-DNA phosphodiesterase	Family	Interproscan
PF14560	Ubiquitin_2	Ubiquitin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR000938	Domain	CAP Gly-rich domain	Interproscan
IPR010347	Family	Tyrosyl-DNA phosphodiesterase I	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036859	Homologous_superfamily	CAP Gly-rich domain superfamily	Interproscan
IPR045172	Domain	Tubulin-folding cofactor B, ubiquitin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12415	TYROSYL-DNA PHOSPHODIESTERASE 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0007021	Biological Process	tubulin complex assembly	Interproscan
GO:0007023	Biological Process	post-chaperonin tubulin folding pathway	Interproscan
GO:0008081	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0017005	Molecular Function	3'-tyrosyl-DNA phosphodiesterase activity	Interproscan
GO:0043014	Molecular Function	alpha-tubulin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-