Detailed information of Ama17080 in Archivesica marissinica Gene info
Gene IDAnnotationChromosomeStartEndStrand
Ama17080NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAININGchr103304008333109624-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
--

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01189Methyltr_RsmB-F16S rRNA methyltransferase RsmB/FFamilyInterproscan
PF12874zf-metZinc-finger of C2H2 typeDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001678DomainSAM-dependent methyltransferase RsmB-F/NOP2-type domainInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR023267FamilyRNA (C5-cytosine) methyltransferaseInterproscan
IPR023270FamilytRNA (C5-cytosine) methyltransferase, NCL1Interproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR049560DomainSAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR22808NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAININGInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000049Molecular FunctiontRNA bindingInterproscan
GO:0001510Biological ProcessRNA methylationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0008173Molecular FunctionRNA methyltransferase activityInterproscan
GO:0016428Molecular FunctiontRNA (cytidine-5-)-methyltransferase activityInterproscan
GO:0030488Biological ProcesstRNA methylationInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
------

TOP