Gene detail

Detailed information of Ama19520 in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama19520	TUMOR NECROSIS FACTOR RECEPTOR	chr13	44032650	44054564	+

Gene Structure

More details in Jbrowse Sequence

CDS

Ama19520

ATGAAATGGCATTTCATTACAGGTGACCTGAGTCAGTGTCAGTGTGCAAGCTGTGTGGGTACCGCCGAGTCACGGGTGTGCTACAGTTGTGGAACCAAGCCGGGTACAAGCCCCAAGAAGACTACAAGTCCAGGGGTATCTCTCTTCATAGAATCTCAAGAGCCTTTGCCCGAGGATTATGGACATTTTATACTGAAGAATCCCCACATGGCAGTTTGGGACGGTAGAAACACCCATGTTGTAGAGATTGATAAAGGTCAAGCGAAAGAGTTTGGATTCTCGTATAAAGTTAAAGTAGGAAAGAATCAAGATACAAGTGTTGAAGTTTATACTTTGGTAAAAAGTGTCGATAAAGGAGGCCCTGCCATGGGGAAATTGCGTTTGGGCGACTGGATTAGGTCTGTGAATGGTACACCTATACAGAACCCCAAGGAAACGTTTAGCCTTATCAGCAGCAGCAGTGATAACAGCACATTGCGTCTGCTTATACAGAGACCTGTAGGATTCTCCCAGCACCCAAGCAATGTACGCTCTGATAAATCCGAAACCTATATGCAGGTCGCGAAACCACCGTCACCGTTACCAAGCTCACAAAGTGCTAAGGAGCAGGACCCTTTAATTCCGGGAATAATTGAACCTAGGAATGATCGGGAAACGGTAGTACGACAACAGAATACATACTTCTCAGACATGTCACCTAGCAGCAATGAAACCGATCCTGGGAACGCGCCATTTCCCAAAACTGTGAAATTTCCAAAGGTTCGGATTTTTGTCTGTGGGAGCGAGGCTGAAAATTGTACGGACTTACTGTTAAAGGACTCGGCAATTGAAGCAGTTTTTCAGAATATTGGATACACTCGTGTGGAATTTTCGATGGCGACAAATTGTTTCGGAAATGTAGTGATATCAAAGGTGTGCTCAAATTTATTCGCAGCCAGTAGTCAGTTAAACTCTTACTCGTCTCATGTCAGCCAATCAGATCTGAGAGGAGGCAGAGACATAAGATGTATACAATGTGGAAGTGATTTCAGCACGCACGGTTCATCTAATGCTGTTGGCGCTATTGTAAACGTAGAACTATTTGTGGTACCTGATGATAAACTGTTCCACTACTGCTGTTCTTACCTCTTCACAAAATCCAGTCTGTTTATTTTGACGTTTGACGGTGATAAAATGTTACGAGCAGCTCCGCAAGAATTCTCTCGATTGCATAATTTGTCACACACGATACGTAGTTATGCGGGTGAAGAGTGTCACATTATGTCATGCGGGTTGTTAGAAAGTGGCGACGAAGCAAACAACGTACTCGATGAAGTCAGGGCATTATTTTATACTCCTTACAATACTCAACTCCAGGACTATAACGTATCTGGCCCAGAACTTATAAATATTCAATCAAGCGAGTCGAGTCAGTTAGACAGTGGCATCGTGCATCGCAGTCACGAGCTGCAGTTTCTGCTGTGGAAGACGATGACGGACACAATACAGCGCCAGCATGTATTACAACCGGCGCTGGTGCTGGTGGACTACCTGCACTCGATGCGGAACAAGGATCAGATCCTCACGGAGGACAAGTTTATGAGTGTTATTAAATCCAATCTGCCAGACTTTCAATTAGACGTCCATCAGATGATTCTGACATACCTCAATACTTTCGGAGAAATCATTTTGGGAAAGGCTACCCCGTTGTTCTCCCAGGGTCTGTATGCTATAGAAAGCCTTGTGATATTGAACCCAACGTTTCTACTGGATTGTCTGTACCGTGTGTTATCTGTGATATGTGAGGACAAGCAGGTGTGGAGCAGGACTCACTACACAGGTTTTATCAAGGCTTCTGACCTGACCAACCTCACAGGATTATGTAACAATGAACTACAGTGCAGATATGTCATTGACTTCTGGCAATGTATTGGATTGATATTCCGAAAACCCAAATCAACCAACGTAGCTGAGGCGGAGTTCTTTCTCCCGTACTTTTCCCAAGTACCTAGTTCTAGTGATATGCCGTTAGCTGGCAAGAAGGACCAGGAGTTATATCTACAGTTCAGCGATCACGAGTCGAGCCAGACGTTCTACCAGGTACTGTTTGTTCTGGCTGAGCACTCGGATTCTCCTGACAGTCTCGTGATACATGGCTCCAACACCGGGGTGTTCACACACAATGGCTGTCTAGTCACAGTTTTCCATCAGAAGATCGAGGATAGAGTCAAATTCATGTTCAGAAAGGAGGATAAAGGCTCTGAAATGAAACCATCAGCATTGTACAAATGGCTTTACTCCACATGCAATCTGTATCTGGAAGTAAACTACACAGTGTGTGCATTGTGCCCGCTAGGAGAGACGTGTCATCGTGGCCCCGCTGGGGGAGCACACATGATCAATCTGAGAGAGTCCAAACCACAGTTCTGTGGGGATGACAGGATAGATTTGCTCAAACCGATCAGAGTGTGGAAACAAAAAGATGGAGAGAACCTTGCAGTAGAGAATGTTTCCTTGCAGAAATTGAACAGTAAACCGGGGAAGCAGCTACTGATGGAACTACCATGGACAATCTTTCATGGACTGTGTGTCAAACTCAAGGTCCCTAGTACCCTAGGGAATGACTGGAAGGGGCTAGCAGGTTTGATGGGATACAATGCAGAACAAGTCGAATTGTACAAGACAGCCCCGGATCCTGTGAGACAGCTCTTGTGTGACTGGGGTCAGTCAAATAACTCTACAGTAGAGCAACTGATCACTCTCTTGTCTAAGATGGAAAGAGTGGACATTGTGTCAGACATCCAACAATCGTTAGTTCAATCATCTACAACTCCTACGGCAACTACATCGACCTCCAGAAACTCTGACGATGTATCGGAACTCCAGCCATCCCCCATACAACATTCGGCACCAGCTGTGCAGGCTTCCAGTCAGTCATCACAATCAGACATGCCCACTAAGGGAATCCCCCCAATCAGTAATATAACAGTTAGTGAAAGTGGCACGGAAAATGCGGAGAGTGAGAATGAAACAGTGCCCAGTCATGTTCCTAAAGGTAGGGGTGTGGCTAACATTGGCATAGAAGAAGCAGTTGGGCCAAGTGCCAGCCTGGGTGGAAAATTAAGCAATCTTGACAACAACAATCAGGTGGACAGTGTGCGTGGTATAGATACAGATATGATGATTACGCCTGTAGAAACGCCACGTAGAGCTGGACCCATAACAGAATCTTAG

Transcript

Ama19520

CAGTAATGTCTGTCATTAGTTTCTCTGGGGATTATGAAATGGCATTTCATTACAGGTGACCTGAGTCAGTGTCAGTGTGCAAGCTGTGTGGGTACCGCCGAGTCACGGGTGTGCTACAGTTGTGGAACCAAGCCGGGTACAAGCCCCAAGAAGACTACAAGTCCAGGGGTATCTCTCTTCATAGAATCTCAAGAGCCTTTGCCCGAGGATTATGGACATTTTATACTGAAGAATCCCCACATGGCAGTTTGGGACGGTAGAAACACCCATGTTGTAGAGATTGATAAAGGTCAAGCGAAAGAGTTTGGATTCTCGTATAAAGTTAAAGTAGGAAAGAATCAAGATACAAGTGTTGAAGTTTATACTTTGGTAAAAAGTGTCGATAAAGGAGGCCCTGCCATGGGGAAATTGCGTTTGGGCGACTGGATTAGGTCTGTGAATGGTACACCTATACAGAACCCCAAGGAAACGTTTAGCCTTATCAGCAGCAGCAGTGATAACAGCACATTGCGTCTGCTTATACAGAGACCTGTAGGATTCTCCCAGCACCCAAGCAATGTACGCTCTGATAAATCCGAAACCTATATGCAGGTCGCGAAACCACCGTCACCGTTACCAAGCTCACAAAGTGCTAAGGAGCAGGACCCTTTAATTCCGGGAATAATTGAACCTAGGAATGATCGGGAAACGGTAGTACGACAACAGAATACATACTTCTCAGACATGTCACCTAGCAGCAATGAAACCGATCCTGGGAACGCGCCATTTCCCAAAACTGTGAAATTTCCAAAGGTTCGGATTTTTGTCTGTGGGAGCGAGGCTGAAAATTGTACGGACTTACTGTTAAAGGACTCGGCAATTGAAGCAGTTTTTCAGAATATTGGATACACTCGTGTGGAATTTTCGATGGCGACAAATTGTTTCGGAAATGTAGTGATATCAAAGGTGTGCTCAAATTTATTCGCAGCCAGTAGTCAGTTAAACTCTTACTCGTCTCATGTCAGCCAATCAGATCTGAGAGGAGGCAGAGACATAAGATGTATACAATGTGGAAGTGATTTCAGCACGCACGGTTCATCTAATGCTGTTGGCGCTATTGTAAACGTAGAACTATTTGTGGTACCTGATGATAAACTGTTCCACTACTGCTGTTCTTACCTCTTCACAAAATCCAGTCTGTTTATTTTGACGTTTGACGGTGATAAAATGTTACGAGCAGCTCCGCAAGAATTCTCTCGATTGCATAATTTGTCACACACGATACGTAGTTATGCGGGTGAAGAGTGTCACATTATGTCATGCGGGTTGTTAGAAAGTGGCGACGAAGCAAACAACGTACTCGATGAAGTCAGGGCATTATTTTATACTCCTTACAATACTCAACTCCAGGACTATAACGTATCTGGCCCAGAACTTATAAATATTCAATCAAGCGAGTCGAGTCAGTTAGACAGTGGCATCGTGCATCGCAGTCACGAGCTGCAGTTTCTGCTGTGGAAGACGATGACGGACACAATACAGCGCCAGCATGTATTACAACCGGCGCTGGTGCTGGTGGACTACCTGCACTCGATGCGGAACAAGGATCAGATCCTCACGGAGGACAAGTTTATGAGTGTTATTAAATCCAATCTGCCAGACTTTCAATTAGACGTCCATCAGATGATTCTGACATACCTCAATACTTTCGGAGAAATCATTTTGGGAAAGGCTACCCCGTTGTTCTCCCAGGGTCTGTATGCTATAGAAAGCCTTGTGATATTGAACCCAACGTTTCTACTGGATTGTCTGTACCGTGTGTTATCTGTGATATGTGAGGACAAGCAGGTGTGGAGCAGGACTCACTACACAGGTTTTATCAAGGCTTCTGACCTGACCAACCTCACAGGATTATGTAACAATGAACTACAGTGCAGATATGTCATTGACTTCTGGCAATGTATTGGATTGATATTCCGAAAACCCAAATCAACCAACGTAGCTGAGGCGGAGTTCTTTCTCCCGTACTTTTCCCAAGTACCTAGTTCTAGTGATATGCCGTTAGCTGGCAAGAAGGACCAGGAGTTATATCTACAGTTCAGCGATCACGAGTCGAGCCAGACGTTCTACCAGGTACTGTTTGTTCTGGCTGAGCACTCGGATTCTCCTGACAGTCTCGTGATACATGGCTCCAACACCGGGGTGTTCACACACAATGGCTGTCTAGTCACAGTTTTCCATCAGAAGATCGAGGATAGAGTCAAATTCATGTTCAGAAAGGAGGATAAAGGCTCTGAAATGAAACCATCAGCATTGTACAAATGGCTTTACTCCACATGCAATCTGTATCTGGAAGTAAACTACACAGTGTGTGCATTGTGCCCGCTAGGAGAGACGTGTCATCGTGGCCCCGCTGGGGGAGCACACATGATCAATCTGAGAGAGTCCAAACCACAGTTCTGTGGGGATGACAGGATAGATTTGCTCAAACCGATCAGAGTGTGGAAACAAAAAGATGGAGAGAACCTTGCAGTAGAGAATGTTTCCTTGCAGAAATTGAACAGTAAACCGGGGAAGCAGCTACTGATGGAACTACCATGGACAATCTTTCATGGACTGTGTGTCAAACTCAAGGTCCCTAGTACCCTAGGGAATGACTGGAAGGGGCTAGCAGGTTTGATGGGATACAATGCAGAACAAGTCGAATTGTACAAGACAGCCCCGGATCCTGTGAGACAGCTCTTGTGTGACTGGGGTCAGTCAAATAACTCTACAGTAGAGCAACTGATCACTCTCTTGTCTAAGATGGAAAGAGTGGACATTGTGTCAGACATCCAACAATCGTTAGTTCAATCATCTACAACTCCTACGGCAACTACATCGACCTCCAGAAACTCTGACGATGTATCGGAACTCCAGCCATCCCCCATACAACATTCGGCACCAGCTGTGCAGGCTTCCAGTCAGTCATCACAATCAGACATGCCCACTAAGGGAATCCCCCCAATCAGTAATATAACAGTTAGTGAAAGTGGCACGGAAAATGCGGAGAGTGAGAATGAAACAGTGCCCAGTCATGTTCCTAAAGGTAGGGGTGTGGCTAACATTGGCATAGAAGAAGCAGTTGGGCCAAGTGCCAGCCTGGGTGGAAAATTAAGCAATCTTGACAACAACAATCAGGTGGACAGTGTGCGTGGTATAGATACAGATATGATGATTACGCCTGTAGAAACGCCACGTAGAGCTGGACCCATAACAGAATCTTAGTCTCTAGAAACGCCACGTAGAGCTGGACCCATAACAGAATCTTAGTCTCTAGAAACGCCACGTAGAGCTGGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan
PF17820	PDZ_6	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR041489	Domain	PDZ domain 6	Interproscan
IPR052302	Family	Neurotrophin receptor-related death domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46605	TUMOR NECROSIS FACTOR RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005035	Molecular Function	death receptor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0007266	Biological Process	Rho protein signal transduction	Interproscan
GO:0009986	Cellular Component	cell surface	Interproscan
GO:0015026	Molecular Function	coreceptor activity	Interproscan
GO:0048406	Molecular Function	nerve growth factor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-