Gene detail

Detailed information of Ama21062 in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama21062	LD44762P	chr18	27692687	27726152	+

Gene Structure

More details in Jbrowse Sequence

CDS

Ama21062

ATGGAAAAGAAGACATATGATAAGTTATTCAAACTGCTCCTTGTTGGAGATTCAGATTGCGGGAAAAGTGCAATACTGTTCCGATTTGCACACGATCCATTTTCTACACACACAATAGGAGTCGACTTCAAAATCAAACGTATTGATATAGATGGAAAACAGATTAAGCTGCAAATATGGGACACAGCTGGACAAGAGAGATTCCACAGCATTACGTCGTCTTATTACAGGGGTGCACAGGGTGTTATGTTGGTGTACGATATTACAAATGAGAAGTCGTTCGACAGTCTATCCAATTGGATCGAAAATGTGTGGCAGAATGCATCAGAAAATATCGAGATCATACTTGTTGGAAACAACTGCGAAGCCGATGATAAAAGAGAAGTCAGCAAGATGAGGGGAGAGCAGTTTGCTCGGAAACACGGAATAAATTTCATGGAAATCAGTACAAAGTCAAACATTAATATCGATGCTGCATTTGACACATTAGCGAGGGGAATCAATGCAAAGTTATACCCACAGGGGTTGATACCCAGCAAGGAGATACTTCAGGAAGATAACGGCTCTTCCGCCGGAGTTGCTAAACGGTTGACAAGTACGATTAAAGGTTTTTTCATACCAAAAAGAAAGGAGGAGATGGAATCCGGTTCAGCTCAAAGATCAGACCTAGTTCCCGATGAAATCCGACAGGATCCATATTCTTTAGAGTTGTACGAAACGGCACTGAGAGATGGTAAAGAGATTGACCGGTCCATACGTATTAACATAGTTGGAAATTATAGACAAGGAAAGACGTCACTAGCGAGAAGGCTTATAGGACACAAAATAGACACTGTTGAGAGCACTAATGGTATAGAGGTTGAACATTATACATGTCGGAGAACGCCGGATGGAATCCTAACTTACAGTAAGGCAGATGATATGGAGTCAGATATTATTGGGCGTCTACTGTCGGTTATTCACACGAAGGTAGAAGATCGAGATGGGGAACCAATAATAGATACATATCCGAGTAACCGTGTCTTACCAACAACATCGGAACAAACACAAACTACGGTAGATATACCTGATTTGGATGCTGGTTCACATCTAGAGCCAGAAAAGGCAGTACCTCCAAATATATGTATTGACAGGGATGTGGATCATATTCTACAATCAAAGGCTGCTCAAACTAATACAAACGATGAAACGTTAAACACAGAACATAATGATAGAATGAAAGTATCACTATTATCAGAGGAAGAAAAAGTAAGATTTGCAAAAGAAGTGAAGAGAGATAAAGCCACTGATTCCAAACAGGATTTGAAGGCATCATTAGATGTCTGGGATTTCGGCGGGCAATACATATTTTACGCAACACATACAGTTTTTCACAGCAAAAGAGCAATTTATCTGCTAGTCTTTGATCTTTCCCAGCCGCTGTGTGCAACAGTGCAAGACGAAGACTTCACTGCGTTTTCTAGTCAACATAGAAATATGGAATACTTTCTTCGTTTCTGGATGAATTCTATTCATTCATTTGTTGGATCTGATGACGGGAGGGACCCACCCATATTTCTCGTTGGCACGCATAGAGATAAACTCAAAGGAGATGCGATAGATCAACGCGCGTATATTGAACATTATTTTGATGAGGTTAGGAAACTGTTTGATGGTACACGATTGATTCATCACATTCACCAAGAAGACTTTTCTGTTGACAATACTATTGCGAACGACGACGTAGTTGTAGCTTTACGTGAAGCAATCATTAGCGTTGGAAATGAGCGCTCATGTGCATTTGAAATACCAGCGAAATGGATTCCGCTAGAGAAGTCATTAAATGCAAAGCGACACCTCAAAATCATTTCCTTTCAGTTTGTATCAGCGATTGACGCTGAAAACGAATTCCCTTTGGGTGTTGTCGAACAAATAAAGTTATTTTTGCAGTATCACCATTCCAAAGGCACGTATATGTATTTCGACGAAAACCCATTGTCCGAGTACGTCATTCTTGATCCCAAGTATTTGATCGATGCCTTTAAATCTATTATAACAAGTGGGAGATTTTGCCGAAATAAACCCGAAATTCGTCGTTCGAGACAGGCGCTAGAAAGAGAAGCAAGGCTTGATAACAAACTGATCGATACACAGTGGAGTGAAGATGATTCCTATATGTTTATGCAAAATAAAGATATTCTGCTGTCCTTTCTCATAAAGCACCACATCATTTCAGAAGCAACAACTTATGACGAATCTACACAGAAACCAGAAGGCTTAGGTTGGTATGTTGTTCCGAGTCTGCTAAAAAGCAAACCTGAACAGAAACACATTTGCCAGTTCTTGCAGGGAAAACTGCGGACACAACTGCGTTTTGTGATGCTATTTTGTGATTCTTCAATTGTCCCTATAGTCTATCATCGTCTGCTTGCCGCAACTATTTACAGATGGTCTATTGCTGTATTCGTTGGGGTACCTTTCGTGTTTGAACACCTCTGCGTCGTAAGATTAAACGAAGACCATGCAGGTATTACGGAAATGAAGAATGACACTATTGAACTATCAGTTGTGAATCTTTGTCCAACGGTATGTGTTGATCGCGAACAAGTTGATATATTCAGACGATTTTCTGAAGCAATAATCGGGCACGAATTCAGAAAGCTGCGCGGAAGAGAGGAACTCCATGCCAAACCATATTCCATTCGGTATAGGTGCAATCATGAGACGCATGGTAAAGATGGTAGCTTAAGGATCATAGAAATAGACACATCACACAACCTCAAAAAGTTAGTCCCTTGTCCAGATTTGGTCACACATACGATATATCCTGAAAAGGCGTTACTGGAATGGTACCAGGACGACAGGAAACCTTTGGTCGTCCCACACATACAAGTGGATGACAGGTTATTGAGCAGGATATCGCAGTATATCGGTAATAACTGGCAACTACTTGGATACGAATTTGGGCTTTCGCAAGTACAAATAGAACACATTATTGCAGATCACCCTTACAGTACACCGTTAAAGATATATTACATGCTGAAGAGTGCGTGCAAAATAATGTCAGATTCGGCATCAATGAATAGTTTGGTGCAGGTGATGCAGCGGTGTCCCAGCGTTACAATTGAATGGGATGAAATTAGAAACATTGTTGATGACATAGTACCGTAG

Transcript

Ama21062

GGATTTGATTCATTGATATAATGAATTAATGATCTACACATGCACACATAATACACACGTATACAGTGTTGACAACTAGTACAGTGATAGTATTGTTATCAGCTACAAGTCGGAAGCTATGGAAAAGAAGACATATGATAAGTTATTCAAACTGCTCCTTGTTGGAGATTCAGATTGCGGGAAAAGTGCAATACTGTTCCGATTTGCACACGATCCATTTTCTACACACACAATAGGAGTCGACTTCAAAATCAAACGTATTGATATAGATGGAAAACAGATTAAGCTGCAAATATGGGACACAGCTGGACAAGAGAGATTCCACAGCATTACGTCGTCTTATTACAGGGGTGCACAGGGTGTTATGTTGGTGTACGATATTACAAATGAGAAGTCGTTCGACAGTCTATCCAATTGGATCGAAAATGTGTGGCAGAATGCATCAGAAAATATCGAGATCATACTTGTTGGAAACAACTGCGAAGCCGATGATAAAAGAGAAGTCAGCAAGATGAGGGGAGAGCAGTTTGCTCGGAAACACGGAATAAATTTCATGGAAATCAGTACAAAGTCAAACATTAATATCGATGCTGCATTTGACACATTAGCGAGGGGAATCAATGCAAAGTTATACCCACAGGGGTTGATACCCAGCAAGGAGATACTTCAGGAAGATAACGGCTCTTCCGCCGGAGTTGCTAAACGGTTGACAAGTACGATTAAAGGTTTTTTCATACCAAAAAGAAAGGAGGAGATGGAATCCGGTTCAGCTCAAAGATCAGACCTAGTTCCCGATGAAATCCGACAGGATCCATATTCTTTAGAGTTGTACGAAACGGCACTGAGAGATGGTAAAGAGATTGACCGGTCCATACGTATTAACATAGTTGGAAATTATAGACAAGGAAAGACGTCACTAGCGAGAAGGCTTATAGGACACAAAATAGACACTGTTGAGAGCACTAATGGTATAGAGGTTGAACATTATACATGTCGGAGAACGCCGGATGGAATCCTAACTTACAGTAAGGCAGATGATATGGAGTCAGATATTATTGGGCGTCTACTGTCGGTTATTCACACGAAGGTAGAAGATCGAGATGGGGAACCAATAATAGATACATATCCGAGTAACCGTGTCTTACCAACAACATCGGAACAAACACAAACTACGGTAGATATACCTGATTTGGATGCTGGTTCACATCTAGAGCCAGAAAAGGCAGTACCTCCAAATATATGTATTGACAGGGATGTGGATCATATTCTACAATCAAAGGCTGCTCAAACTAATACAAACGATGAAACGTTAAACACAGAACATAATGATAGAATGAAAGTATCACTATTATCAGAGGAAGAAAAAGTAAGATTTGCAAAAGAAGTGAAGAGAGATAAAGCCACTGATTCCAAACAGGATTTGAAGGCATCATTAGATGTCTGGGATTTCGGCGGGCAATACATATTTTACGCAACACATACAGTTTTTCACAGCAAAAGAGCAATTTATCTGCTAGTCTTTGATCTTTCCCAGCCGCTGTGTGCAACAGTGCAAGACGAAGACTTCACTGCGTTTTCTAGTCAACATAGAAATATGGAATACTTTCTTCGTTTCTGGATGAATTCTATTCATTCATTTGTTGGATCTGATGACGGGAGGGACCCACCCATATTTCTCGTTGGCACGCATAGAGATAAACTCAAAGGAGATGCGATAGATCAACGCGCGTATATTGAACATTATTTTGATGAGGTTAGGAAACTGTTTGATGGTACACGATTGATTCATCACATTCACCAAGAAGACTTTTCTGTTGACAATACTATTGCGAACGACGACGTAGTTGTAGCTTTACGTGAAGCAATCATTAGCGTTGGAAATGAGCGCTCATGTGCATTTGAAATACCAGCGAAATGGATTCCGCTAGAGAAGTCATTAAATGCAAAGCGACACCTCAAAATCATTTCCTTTCAGTTTGTATCAGCGATTGACGCTGAAAACGAATTCCCTTTGGGTGTTGTCGAACAAATAAAGTTATTTTTGCAGTATCACCATTCCAAAGGCACGTATATGTATTTCGACGAAAACCCATTGTCCGAGTACGTCATTCTTGATCCCAAGTATTTGATCGATGCCTTTAAATCTATTATAACAAGTGGGAGATTTTGCCGAAATAAACCCGAAATTCGTCGTTCGAGACAGGCGCTAGAAAGAGAAGCAAGGCTTGATAACAAACTGATCGATACACAGTGGAGTGAAGATGATTCCTATATGTTTATGCAAAATAAAGATATTCTGCTGTCCTTTCTCATAAAGCACCACATCATTTCAGAAGCAACAACTTATGACGAATCTACACAGAAACCAGAAGGCTTAGGTTGGTATGTTGTTCCGAGTCTGCTAAAAAGCAAACCTGAACAGAAACACATTTGCCAGTTCTTGCAGGGAAAACTGCGGACACAACTGCGTTTTGTGATGCTATTTTGTGATTCTTCAATTGTCCCTATAGTCTATCATCGTCTGCTTGCCGCAACTATTTACAGATGGTCTATTGCTGTATTCGTTGGGGTACCTTTCGTGTTTGAACACCTCTGCGTCGTAAGATTAAACGAAGACCATGCAGGTATTACGGAAATGAAGAATGACACTATTGAACTATCAGTTGTGAATCTTTGTCCAACGGTATGTGTTGATCGCGAACAAGTTGATATATTCAGACGATTTTCTGAAGCAATAATCGGGCACGAATTCAGAAAGCTGCGCGGAAGAGAGGAACTCCATGCCAAACCATATTCCATTCGGTATAGGTGCAATCATGAGACGCATGGTAAAGATGGTAGCTTAAGGATCATAGAAATAGACACATCACACAACCTCAAAAAGTTAGTCCCTTGTCCAGATTTGGTCACACATACGATATATCCTGAAAAGGCGTTACTGGAATGGTACCAGGACGACAGGAAACCTTTGGTCGTCCCACACATACAAGTGGATGACAGGTTATTGAGCAGGATATCGCAGTATATCGGTAATAACTGGCAACTACTTGGATACGAATTTGGGCTTTCGCAAGTACAAATAGAACACATTATTGCAGATCACCCTTACAGTACACCGTTAAAGATATATTACATGCTGAAGAGTGCGTGCAAAATAATGTCAGATTCGGCATCAATGAATAGTTTGGTGCAGGTGATGCAGCGGTGTCCCAGCGTTACAATTGAATGGGATGAAATTAGAAACATTGTTGATGACATAGTACCGTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan
PF08477	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR020859	Domain	Roc domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR050305	Family	Small GTPase superfamily, Rab	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47980	LD44762P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-