| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_10267-4.24 | INTEGRIN BETA SUBUNIT | Bpl_scaf_10267 | 351411 | 392260 | - |
| CDS | |||||
| Bpl_scaf_10267-4.24 | |||||
| Transcript |
| Bpl_scaf_10267-4.24 |
| Protein |
| Bpl_scaf_10267-4.24 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00362 | Integrin_beta | Integrin beta chain VWA domain | Domain | Interproscan |
| PF07974 | EGF_2 | EGF-like domain | Domain | Interproscan |
| PF08725 | Integrin_b_cyt | Integrin beta cytoplasmic domain | Domain | Interproscan |
| PF18372 | I-EGF_1 | Integrin beta epidermal growth factor like domain 1 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002369 | Domain | Integrin beta subunit, VWA domain | Interproscan |
| IPR012896 | Domain | Integrin beta subunit, tail | Interproscan |
| IPR013111 | Domain | EGF-like domain, extracellular | Interproscan |
| IPR014836 | Domain | Integrin beta subunit, cytoplasmic domain | Interproscan |
| IPR015812 | Family | Integrin beta subunit | Interproscan |
| IPR032695 | Homologous_superfamily | Integrin domain superfamily | Interproscan |
| IPR036349 | Homologous_superfamily | Integrin beta tail domain superfamily | Interproscan |
| IPR036465 | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| IPR040622 | Domain | Integrin beta, epidermal growth factor-like domain 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10082 | INTEGRIN BETA SUBUNIT | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005178 | Molecular Function | integrin binding | Interproscan |
| GO:0005925 | Cellular Component | focal adhesion | Interproscan |
| GO:0007160 | Biological Process | cell-matrix adhesion | Interproscan |
| GO:0007229 | Biological Process | integrin-mediated signaling pathway | Interproscan |
| GO:0008305 | Cellular Component | integrin complex | Interproscan |
| GO:0009986 | Cellular Component | cell surface | Interproscan |
| GO:0016477 | Biological Process | cell migration | Interproscan |
| GO:0033627 | Biological Process | cell adhesion mediated by integrin | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K06493 | ITGB3, CD61; integrin beta 3 | - | Rap1 signaling pathway | ko04015 | PMID: 28812709 |
| PI3K-Akt signaling pathway | ko04151 | PMID: 28812709 | |||
| ECM-receptor interaction | ko04512 | PMID: 28812709 | |||
| Phagosome | ko04145 | PMID: 28812709 | |||
| Focal adhesion | ko04510 | PMID: 28812709 | |||
| Regulation of actin cytoskeleton | ko04810 | PMID: 28812709 | |||
| Hematopoietic cell lineage | ko04640 | PMID: 28812709 | |||
| Platelet activation | ko04611 | PMID: 28812709 | |||
| Thyroid hormone signaling pathway | ko04919 | PMID: 28812709 | |||
| Osteoclast differentiation | ko04380 | PMID: 28812709 | |||
| MicroRNAs in cancer | ko05206 | PMID: 28812709 | |||
| Proteoglycans in cancer | ko05205 | PMID: 28812709 | |||
| Fluid shear stress and atherosclerosis | ko05418 | PMID: 28812709 | |||
| Hypertrophic cardiomyopathy (HCM) | ko05410 | PMID: 28812709 | |||
| Arrhythmogenic right ventricular cardiomyopathy (ARVC) | ko05412 | PMID: 28812709 | |||
| Dilated cardiomyopathy (DCM) | ko05414 | PMID: 28812709 | |||
| Human papillomavirus infection | ko05165 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_10267-4.24 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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