Gene detail

Detailed information of Bpl_scaf_11663-2.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_11663-2.7	RNA PROCESSING PROTEIN LD23810P	Bpl_scaf_11663	186967	201092	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_11663-2.7

ATGATGGGACTGGCACCAGAGCCACAGCCACCCTTCCAGATGATGGCAGTTGATCATCAACCACCAGCTGTACAAGGGTACCAGGAAATGGATCAAGTTTCCCAGGACACAGATGAGAGTCGCTCAAGAGATCAAGAATCTAGTCGTGATAGAAAACATAGTAGTCGTAGATCAAAGCACTCGAGGGATAGATCTCGGTCAAGAACACCTAAGAAAAGACGTCGTTCAAGATCTAGATCGCGGGATAGACGCAGAAGATCCCGGTCAAGAGATAGACACAGAAGATCAAGATCACGAGACAGAGACAGGGAAAAGCAAAGAGAAAAAGATAGAGAAAGAAGAAAGAAGGGACTGCCAACACTTAAGGAACAACATATCAGTGTATGTTCAACCACACTGTTTATTGGTAAGGTTCCAAAGACAACATCAGAGGAAGAATTGAGGGAAGAATTAGAGAAATATGGAAAAGTCGATTCAATTAATATGATACCTCCCAGAGGATGTGCATTTGTTTGTATGACAAGGAGAAAAGATGCATACAAAGCCTGTGACAGACTGAAAGGATACAAGTTTTTAGGGAGTGAACTAAGGGTGGCTTGGGCTCCTGGTATTGGAGTGAAGGAATCTGAATTTAAAGACAGATGGGATGTTGAACAGGGTGTAACGTATGTTCCCTGGCCACAGATGCCTGAAGATTTGACAAGGCTAAAGGATGGTGGTATAATTGATGAAGAATCTTTACCAGAAAATCTAAAAGGTAAACAAATTGGAGGTGAGAAGCCAGAAGTTACAGAAGAAGTTAAACCAGCCCCAGGTCAGATGCCAAATAATGTACCACAGCCCATGACAGGACTACCACCTGTCTCGGCTCCAGGACCTTTCCCTCCTGGTTTGCCTCCAGGTATGATGCCTCAGGGCGGTATGATGCCTCCTATGGGGATGCCACACATGGTCATGCCAGGTGGTATGCCACCAGGACAGATGCCAGGTCAGCTGCCTCCACCGATGCCAGGACAGATGCCACCAGGTGTTCCACAACCAATGGCTATGGCCCCAGGGATGCCACCTCCAATGCCAGGACATCCACCCCCGGGGATGATTCCTCTACCTGGTGGTGGTGTTGGATTAAGACAGGTTGGCCCTCCTTCATCAAACGCTCCTGGTCTTCAACTCTCTCAGAACATACAGAATATAATGGCGAGTACAACTGCTGCAACGATTGCTTCTCAGCCGCCTATAACTGTGTTTAGGCATGGTTTTCAACCACAGCCTGGTTTCCCACAATTCCCTCAATTCCAGGGTCAACAATTCAGAATGCAGCCACCTAACTTTAGTCAAAGACCCCCAATTCATATGCATCAACTTCCACCAGGATCACAACCCTCACATATACCTCTTTCAATGCATCAAGGCATGGGCCCTAGACCATTGTTGGGTCAAGGCCCAGGTCCTGGTCCTGGTCCTCGTCCAATATTTGGCCAGAATCCTGAGACTGAAAACAATGGTTTCCAAGGTAATAAATGGCAGCAAAATAGGGGTCCACCAGTTCAAATGGAACCACCTGGTATTGATGAGAGTGCTCCAGAAGTGGAGGAAAATGTAGAAAAGCCAGCAGTGGCAGAAGAGGAGGAGGAGGAAAGCAATGAGATGGAAATGGATCCAGAAGAAAAAGAACAACTAATGCAATTTGATCTCCCTATGAGTTTTGGCAGCAACAAACTTCAATTGAAAAAGCCAGATCAAGAGCAAAATGAATGGGGTGGACGAGGCCGTGGTCGAGGAGGTTTTGATAGAGGACGTGGTGGAATGGGTGGACCTAGAGGTCCAAGACCATTGATGGATTTCAATAGTATTATGGGAGGAGGAAGAGGGGGACGAGGAGGCTTTGGAAATCAAAGGGGATTTGGATCAAGAGGTCCTAGATTTGACAATCGCATGCAGTTTAATCGTAACTTTAGAGGTGGACCGCCAGGTTTTAGAGGCCCACCAGGGAATAACTGGAGACCACCCTTTGATGGTCCACCTGATATGGAGGGCGATGAATCAGAAAATAGACCAGAGGATGAAAATCCTACTGCTGAATCTGAAGAAAGAGATGAAAATGCCCTTCCTACTGAATTTGGAAGTAGACGTCGTGGCAATAGAGGTCGGGATGATTATGGAGGTAGAAATCGGGATGACAACCAAGAAGAATGGGAAGGAGATCAAGTTGAGGAGGAGAGAGATGAAAATGCTTTACCTATGGAATTTGGAAGTACGAAACGAGGAAGAGGTGGTGGAAGGGGAAGAGGTTATGGAAGGGATAACTATGGAGGTCGCAATAGGGATGATGATGGTTGGGGAGGTGATCAGCAAAATGAAGAAAATCAGGAGGAACCTGATGAAAATGCACTGCCAACAGAATTTGGAAGTCGTAGAAAGTTTGACAGAGGTGGAGGACGTGGCAGAGACAATTTTGGTGGAAGGGATCGTAGAAGTGGTGAATATGACCGTCGTGATAGGCGGGATGACAGACGTGACGACGATCGTAGAGGAAGAGATCGTAACTATGACAGGAGGGATAGGGATCGCGACCGTGACCGTGACAAAGGGAGGGACAGAGATTATGATAGAGATAGGGATCGAAGTGACAGAGATAAAGATCATAGTGAGAGGGATAAAGATCGTAGTGACAGAGATAAAGATCATAATCGACGTGATAGAGATCGTGATCATACTGTTAGAAAGTCTCGATGGAGCGATGCTCCAGCTGAAGTACCAGAAGTTATTACGGATACTGACAATTCTGGAGGCAATGCTGCTCCTGAGGTTGCGAATGTTTCAGTAGCAGAGCCCCCACCTATCGTGGATTCTACTGTGGAAGGCCAAGGACAAACTAATGGACCGGAAACTTGTGAAACAAATGAACCTACAATACCGAATGAAAATAGAAATGAAGGTAATGACATTGTTGAAAAGTCTATAGAACCAAAGACATCTGATCCAGATAAAGTGCTAGAAGAAGGAGAAATTGAATAA

Transcript

Bpl_scaf_11663-2.7

AGCCACCTCATCCTCCTCAGCCTCCAACAATGATGGGACTGGCACCAGAGCCACAGCCACCCTTCCAGATGATGGCAGTTGATCATCAACCACCAGCTGTACAAGGGTACCAGGAAATGGATCAAGTTTCCCAGGACACAGATGAGAGTCGCTCAAGAGATCAAGAATCTAGTCGTGATAGAAAACATAGTAGTCGTAGATCAAAGCACTCGAGGGATAGATCTCGGTCAAGAACACCTAAGAAAAGACGTCGTTCAAGATCTAGATCGCGGGATAGACGCAGAAGATCCCGGTCAAGAGATAGACACAGAAGATCAAGATCACGAGACAGAGACAGGGAAAAGCAAAGAGAAAAAGATAGAGAAAGAAGAAAGAAGGGACTGCCAACACTTAAGGAACAACATATCAGTGTATGTTCAACCACACTGTTTATTGGTAAGGTTCCAAAGACAACATCAGAGGAAGAATTGAGGGAAGAATTAGAGAAATATGGAAAAGTCGATTCAATTAATATGATACCTCCCAGAGGATGTGCATTTGTTTGTATGACAAGGAGAAAAGATGCATACAAAGCCTGTGACAGACTGAAAGGATACAAGTTTTTAGGGAGTGAACTAAGGGTGGCTTGGGCTCCTGGTATTGGAGTGAAGGAATCTGAATTTAAAGACAGATGGGATGTTGAACAGGGTGTAACGTATGTTCCCTGGCCACAGATGCCTGAAGATTTGACAAGGCTAAAGGATGGTGGTATAATTGATGAAGAATCTTTACCAGAAAATCTAAAAGGTAAACAAATTGGAGGTGAGAAGCCAGAAGTTACAGAAGAAGTTAAACCAGCCCCAGGTCAGATGCCAAATAATGTACCACAGCCCATGACAGGACTACCACCTGTCTCGGCTCCAGGACCTTTCCCTCCTGGTTTGCCTCCAGGTATGATGCCTCAGGGCGGTATGATGCCTCCTATGGGGATGCCACACATGGTCATGCCAGGTGGTATGCCACCAGGACAGATGCCAGGTCAGCTGCCTCCACCGATGCCAGGACAGATGCCACCAGGTGTTCCACAACCAATGGCTATGGCCCCAGGGATGCCACCTCCAATGCCAGGACATCCACCCCCGGGGATGATTCCTCTACCTGGTGGTGGTGTTGGATTAAGACAGGTTGGCCCTCCTTCATCAAACGCTCCTGGTCTTCAACTCTCTCAGAACATACAGAATATAATGGCGAGTACAACTGCTGCAACGATTGCTTCTCAGCCGCCTATAACTGTGTTTAGGCATGGTTTTCAACCACAGCCTGGTTTCCCACAATTCCCTCAATTCCAGGGTCAACAATTCAGAATGCAGCCACCTAACTTTAGTCAAAGACCCCCAATTCATATGCATCAACTTCCACCAGGATCACAACCCTCACATATACCTCTTTCAATGCATCAAGGCATGGGCCCTAGACCATTGTTGGGTCAAGGCCCAGGTCCTGGTCCTGGTCCTCGTCCAATATTTGGCCAGAATCCTGAGACTGAAAACAATGGTTTCCAAGGTAATAAATGGCAGCAAAATAGGGGTCCACCAGTTCAAATGGAACCACCTGGTATTGATGAGAGTGCTCCAGAAGTGGAGGAAAATGTAGAAAAGCCAGCAGTGGCAGAAGAGGAGGAGGAGGAAAGCAATGAGATGGAAATGGATCCAGAAGAAAAAGAACAACTAATGCAATTTGATCTCCCTATGAGTTTTGGCAGCAACAAACTTCAATTGAAAAAGCCAGATCAAGAGCAAAATGAATGGGGTGGACGAGGCCGTGGTCGAGGAGGTTTTGATAGAGGACGTGGTGGAATGGGTGGACCTAGAGGTCCAAGACCATTGATGGATTTCAATAGTATTATGGGAGGAGGAAGAGGGGGACGAGGAGGCTTTGGAAATCAAAGGGGATTTGGATCAAGAGGTCCTAGATTTGACAATCGCATGCAGTTTAATCGTAACTTTAGAGGTGGACCGCCAGGTTTTAGAGGCCCACCAGGGAATAACTGGAGACCACCCTTTGATGGTCCACCTGATATGGAGGGCGATGAATCAGAAAATAGACCAGAGGATGAAAATCCTACTGCTGAATCTGAAGAAAGAGATGAAAATGCCCTTCCTACTGAATTTGGAAGTAGACGTCGTGGCAATAGAGGTCGGGATGATTATGGAGGTAGAAATCGGGATGACAACCAAGAAGAATGGGAAGGAGATCAAGTTGAGGAGGAGAGAGATGAAAATGCTTTACCTATGGAATTTGGAAGTACGAAACGAGGAAGAGGTGGTGGAAGGGGAAGAGGTTATGGAAGGGATAACTATGGAGGTCGCAATAGGGATGATGATGGTTGGGGAGGTGATCAGCAAAATGAAGAAAATCAGGAGGAACCTGATGAAAATGCACTGCCAACAGAATTTGGAAGTCGTAGAAAGTTTGACAGAGGTGGAGGACGTGGCAGAGACAATTTTGGTGGAAGGGATCGTAGAAGTGGTGAATATGACCGTCGTGATAGGCGGGATGACAGACGTGACGACGATCGTAGAGGAAGAGATCGTAACTATGACAGGAGGGATAGGGATCGCGACCGTGACCGTGACAAAGGGAGGGACAGAGATTATGATAGAGATAGGGATCGAAGTGACAGAGATAAAGATCATAGTGAGAGGGATAAAGATCGTAGTGACAGAGATAAAGATCATAATCGACGTGATAGAGATCGTGATCATACTGTTAGAAAGTCTCGATGGAGCGATGCTCCAGCTGAAGTACCAGAAGTTATTACGGATACTGACAATTCTGGAGGCAATGCTGCTCCTGAGGTTGCGAATGTTTCAGTAGCAGAGCCCCCACCTATCGTGGATTCTACTGTGGAAGGCCAAGGACAAACTAATGGACCGGAAACTTGTGAAACAAATGAACCTACAATACCGAATGAAAATAGAAATGAAGGTAATGACATTGTTGAAAAGTCTATAGAACCAAAGACATCTGATCCAGATAAAGTGCTAGAAGAAGGAGAAATTGAATAATATTAATTTATTTTTTAGTCATTTACTTTTCAAATTGTTCCATGTTTGTATTGTAAAGTGATTTTTTTTTATCACTGATGTAAGAAAAAAATATGTTTACTAGAGATGTGACATTTTCCTGATCAATAAAAAATGCATTTTTTTTTTCTTCTATAAATAACCTACCAATCTCAACTTTTTCATTGTTTATGTATCAGTGACAAATCGCAATATTTTTAATATTGGATGATCGCTTTTAGGTTTTTCGCTTAAATGTGAGAAAAAAAAACTATTGACCCGAAATAATTTTTTATGGATGACCATATAGCATTTTTAGGTATTTTGCTTAAATGAGGAAAAACTATAGCCCCATAAAACTGTTATAAGGATGACCATATAACATTAGTTTTAATCATCTTTCATTTTTCAACGAATGCAAAAAAAAATGCAGTTGTATTATATTTTTCTTCATCCAATGTACATTTTTATCTGCACTTAAGATTGTATCATACAGGAAAATGTCACGGTTTGTGAGTCAACATTTATACATATGAATTATTGTGACATGTCATCACGTTTGTTGTTTAAAAACATGATCATTTATCTGATTGTAAGTATTCTTTTTTTAATACCTGTTTTTTTTTGTATTTTGCATAAATACTAATATTTTTATTGTACAAAGAAAACAACCTTGAGTCAGTTTTCTTAAAATACATTAAGGATAATTTTTGTAATCTTAGGTGTTTAAATTTGTGTGAATGACTAGGGTATGAGAGATAGATATGTAAATATACAAGCTTGACTTTATTTCATATACAATGTATTTATAAGTACAGTAAATCTATACGTATGTCTGCCACGATATAGCTGAAATATTGTTGAAAGTGGCAATAACATCATAACCCAAACCTCTATACGTATGTCTGCCACGATATAGCTGAAATATTATTGAAAGTGGCAATAACATCATAACCCAAACCTCTATACTTATGTCTCTACTAGACTTTCAATTGTAATAATTATTTATTTTCAATGTTCCTGATTTTGTTATCTTTACCGTAGCAAATATTTTGTGAAAAAAAAATTTAATATTAGATTTTTTTTTACATAGAATATTGATGCATGAATGTTATGATTTCACAGATCTACAGATCATGTGGGGGGAGGAGGGGGGATATTTTCTTGTGGTTTTCAGCATTCACTATCTTGATCTTCCTACCCCATAGTATGTTATTGAAATAAAAAAAATTTAAAAGTTAATTTTACTACCTATGTGACCTACCACAATATCTTTTTACTTGATTATTGTAACAGTCTGCCAAAAACATTTTGACAAACTAGCCTGATTCGGTATATCAGAAGAATCTTTTTTCTATTTGATTAAGCAAATTTAATCTATTTTTTACTAGCCCAAGCCAATTTTTATTAGACTGGGGCATAGGGCTAGTGGTTTTTGGGGCAGACTGTTGTAACATATCTATTATTTCCCTGGTTGTTACAATGATTGTCCTTTTGAACATGATAATTTACAGATAATACTCTCCATCAATCTTGTCCCGCTAAAAGCGATATACATAATTTTTATCTGTTGTAGCCTTACACTGCATGGTATCTGAATATATTATACTTTACGTTTTTATTTTCCCTATTTGTCTTTGTTAGCGCAGCCGGTCCATATAACGTTATATGGACCGGCAGTGAACTGCCTCGTTTTCGAGTCTTTATTTCGGGAGATAATTGGGTTTGTTTTTGGACGCGAAGTATAATATAACAAATAGTTCACGGCACTTCGGGCCATATGGCAGTTTATGGACCGGTCTGTCACCCACAAAATACTATATGGACCTCAGCTTCGCTTCGATCCATATAATATTTTGTGGGTGACATCCCGGTCCATAAACTGCCATATGGCCCTCAGTGCCGTGAACTATTTGTTAAATAGATACAGTACAGTCAATTTGTTTACATTTATCATTTAAATTTCCAAAATGGTTTGAAGACTAATCAATTTATTTTCAGTTGTTAATTATCCTTCTTTGTAACAGGATTAATTAATCACAAAAATTAAGTATTCCCTCCCAAAAAATATATATTGCTGGGTATATAATAATGAAAATTGTGTATAAAATGTAAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR051485	Family	SR-related and CTD-associated factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23140	RNA PROCESSING PROTEIN LD23810P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13191	RBM16, SCAF8; RNA-binding protein 16	-	Transcription machinery	ko03021	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_11663-2.7 global RNA-seq network