Detailed information of Bpl_scaf_11672-1.27 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_11672-1.27SNRNP CORE PROTEIN FAMILY MEMBERBpl_scaf_11672276280285886+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423LSMLSM domain DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR016654FamilyU6 snRNA-associated Sm-like protein LSm2Interproscan
IPR047575DomainSm domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR13829SNRNP CORE PROTEIN FAMILY MEMBERInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005688Cellular ComponentU6 snRNPInterproscan
GO:0006397Biological ProcessmRNA processingInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:1990726Cellular ComponentLsm1-7-Pat1 complexInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12621LSM2; U6 snRNA-associated Sm-like protein LSm2-Spliceosome ko03040PMID: 28812709
RNA degradation ko03018PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_11672-1.27 global RNA-seq network
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