Detailed information of Bpl_scaf_12379-0.2 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_12379-0.2DNA LIGASE 1/3 FAMILY MEMBERBpl_scaf_1237927723581+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01068DNA_ligase_A_MATP dependent DNA ligase domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR012310DomainDNA ligase, ATP-dependent, centralInterproscan
IPR016059Conserved_siteDNA ligase, ATP-dependent, conserved siteInterproscan
IPR036599Homologous_superfamilyDNA ligase, ATP-dependent, N-terminal domain superfamilyInterproscan
IPR050191FamilyATP-dependent DNA ligaseInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR45674DNA LIGASE 1/3 FAMILY MEMBERInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003909Molecular FunctionDNA ligase activityInterproscan
GO:0003910Molecular FunctionDNA ligase (ATP) activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0006266Biological ProcessDNA ligationInterproscan
GO:0006273Biological Processlagging strand elongationInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:1903461Biological ProcessOkazaki fragment processing involved in mitotic DNA replicationInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10747LIG1; DNA ligase 1EC:6.5.1.1
EC:6.5.1.6
EC:6.5.1.7
DNA replication ko03030PMID: 28812709
Base excision repair ko03410PMID: 28812709
Nucleotide excision repair ko03420PMID: 28812709
Mismatch repair ko03430PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_12379-0.2 global RNA-seq network
TOP