Gene detail

Detailed information of Bpl_scaf_12478-3.13 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_12478-3.13	ATP-BINDING CASSETTE SUB-FAMILY C	Bpl_scaf_12478	316649	366400	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_12478-3.13

ATGATAAAACTTTCTCCAGTCAACCTGTTTCTACTGATTACTGCCGTCTTAATGCTTGCATTAGTTATAATAGATATTGTTACTGCTGTAGATGACTTGAAAGCAGAAAATAGTTATTGGAGGGCCAGATTAGTTGGACCAGTTATTGAAGGGGCCACAGTGTTACTGGTATTGTTATACATTACTCTAGAGAGATACAAAGGGTTTGTGACATCAGGTGTGCTGTTTATGTACTGGACAGTTGCCATAGTAACATATATCATACCATTTTACTCAAAGATCCTTCAAAGGGTGTATGAGACAAACCTGCTCGACTTTGTGACGTTGTACATATATTTTGGTTTGCTAATCATTCAATGGATTTTACACTGTATAGCAGAGGATCTCCCGAATTCCCAGGATGTTTGTCCAGAACAAAGGGCTTCATTTTTATCTAGAATCACGTACAACTGGATAACAAGTCTGTTGATAAAAGGATACAAAAAACCACTAGTAGAAGATGATATGTTTAACTTGAATCAAAGAGACTTATGTAAACATGCATACAGAAGATTTCTTAAGAACTGGAACAAGGAAGTTTTATTGAAAAGGTCAAGAAATAGGACAATATCTCACTCACAAGAAGATGCATCAGAGTCCACTCCATTATTGGTTCCTAGAGTAGAGACAAGGAAATCTGGTTCTCAGCAGAAAAAACCTTCTTTGTTTAAGGTGTTGGCTAAAACGTTTGCTTTAGAAATGCTGCACTCTCACTTTTTCAAGTTGATATACGATGTTACTATTTTTATTACACCGATCCTTTTAAGGCTATTAATAGATTATACAGTTCAAGCAGGAACAAATAATGGTCAGTTCACACAGGAGTGGAAAGGTTATACTTTGGCAGCAGCTTTCTTTGTCACCATACTGGTTCAGTCTATTGTATTTCATCAGCAGTTCTACTGGGGCATGACCTTAGGGATGAGGGTCAAAGCTGCCTTAACCTCGGCTGTTTACAGGAAAGCTTTAACTCTAACAAGCGGAGCTAGGAAGGAATCAACGGTGGGAGAAATTGTCAATTTGATGTCTATTGACACACAACACATTCAGGACACAATAAATTATTTTTGGGCAGTTTGGTCTTCACCACTACAGATTGGTGTCTGTTTATACTTCCTGTACGAGGCAGTGGGACCATCTATGTTTTCTGGATTCGGTGTCCTTGTATTGCTGTTTCCAGTTAACGGGATTATTATGTCAAAACTCCACAAACTTCAGGGTCAACAGATGATCCAGAAAGACAACAGAATTAAACTATTAACTGAAGTCTTGAATGGAATAAAGATTTTAAAATTATATGCCTGGGAAATGTCATTTAAAGACAAGATTTCAGCCATAAGGAATATAGAACTGAAAATCCTGAAGAAGGCAGCTATTTATGGAATCGGCTTTACTTTTTCGTGGACTGTTTCACCTTATTTGGTTTCCTTGGCAACGTTTGCTACTTTTATATTTGTTTCATCTGACCATTATTTAGATGCACAGAAAGCTTTTGTTGCCATCTCATTATTCAACATTCTTAGATTTGCGATCAACTTTGCTCCTATGGCCATTACAGAAACAATCAAGGCAAGTGTATCTATTAAACGTTTGAGCAAGTTCCTAAACCATGAAGAGTTAGATCCTGACAATGTGCAACATGATTTGTCTATAGATGATGCCATAGTGATTCACAAGGGAACATTTATGTGGGATCCAGAAATAGGTGATTGTCTAAAAAAGATAGATCTATCGATACCAGAGAAATCTCTAGTGGCTGTGGTAGGTCAGGTTGGTAGTGGTAAATCAAGTCTGATGTCGGCCATATTGGGAGATATGACTAAAGTGTTGTATGATCGTGTGATTGATGCATGTGCACTTCGACCTGACCTTGACGTACTCCCAGCTGGTGATAGTACAGAAATCGGTGAAAAGGGTATAAATCTGAGTGGTGGACAGAAACAGCGTGTCAGTTTGGCCCGTGCTGTATATCATGATACAGATCTATATCTGTTAGATGACCCTCTAAGTGCTGTTGACTCAAATGTTGGCAAACATATCTTTGATCAAGTTATAGGGAAAGATGGACTTCTGAAAGATAAAACAAGAATCTTAGTTACACATGGAGTAAGATGGCTGCCTATGGTTGATAAAATAATCGTCATGATGGATGGAGCCGTGTCAGAAATGGGATCATATGATGAACTCTTATCACACGAAGGAGCTTTTGCCCAATTCTTAAAATTGTATCTGATACAATCAGAGGATGAAGAAGAGGAGGACCCTGAAGAGAAGGAGATAAAAGCACACATATTACAAAGATTAACCTCTATAACCTCAGATGATGATACTGATAGAGATGTGACATCGGAAACTGATGACAAAAAAATCCTAAAACGATTGATTTCCAAAGATTTAACTGATGGTAAAATTCCAGAACTTCAGATGCTCAAGTCTAAGGAGGAGTTAATAAAAGAGGAGGAGAAGAAATCTACCTCAGACAGTAAACTTATTACAGAGGAAAAACTTATGGAGGGAAATGTCAGTCTTGGTGTGTTTGTTACGTACGCCAAGTCTTTAGGAGTGCCGTATGCAGTGATGGTTCTACTATTGTTTGGATTTTACCAAGCAGCATCAGTATTTAGTAATGTGTGGCTGAGTAAGTGGACATCGGATGCCACTTTAACTAACAGAACAATAGGACCACCAAATAGTACTATTTACCGAGACAAGAATGACTATTATCTAGGAATATATGGTGGAGCTGGGGCTCTTCAAGCAATATTCGTCTTTTCCTACGTGGCAATCTTTGTGATACGATCAATAGCAGCTTCTAGAAAACTCCACAACACGATGTTACACAGTGTAATTAGGTCACCAATGTCATTTTTTGACACCACACCGATTGGTAGAATCGTGAACAGGTTCTCAGCAGATATTGATACAATAGATAATGAGCTGCCTATGACAGTAGAAATGTGGTTGGATACAGCTTTCCTTGTTGTAGCAACAATGGTGGTTATTTCATATAGTACGCCATATTTCATCATTATGATTGTTCCGTTTAGTGTCCTTTATTTCCTTGTACAACGATTTTACGTGTCCACTTCTAGACAACTAAAAAGACTTCAGTCAAAAACACGATCACCGATCTACAACCATTTTGGTGAGTCAGTCTCTGGAGCTAGTGTCATTAGAGCTTATGGAGTACAAGACAGATTTATTGACATCTCAGACGACAGAGTTGGAATAGTTGGCAGAACAGGGGCAGGTAAATCTTCTCTTACTCTGGCATTATTCCGCTTGATTGAGCCTGTCTCTGGGAGTATAGTGATAGACGGAGAAAACCTGTATCACATGGGTCTACATGATTGTAGATCAAAACTTACAATTTTACCACAGGATCCAGTATTGTTTTCTGGTAGTTTAAGGATGAACTTGGATCCTCTAGAAGAAAATAAAGACACTCAGATCTGGAAAGCATTGGAGCATGCCCATCTAAAGGAATTTATACAGAATCTTCCTCAAAAGTTAGAATATGATTGCGGAGAAGGAGGGCAAAACCTCAGTGTTGGACAGAAACAGTTAGTTTGTTTGGCCAGGAGTCTGTTACGTAAAACCAAGATATTGGTGTTAGATGAGGCCACCGCTGCTGTTGACATGGAAACAGATGATTTAATACAGAAGACAATAAGAGAAGAATTCGCTGATTGTACTGTAGTTACGATCGCTCACCGTCTTAACACTGTAATGGATTACGATAGGTAA

Transcript

Bpl_scaf_12478-3.13

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF00664	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR011527	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036640	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR050173	Family	ATP-binding cassette transporter C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24223	ATP-BINDING CASSETTE SUB-FAMILY C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0042626	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05665	ABCC1; ATP-binding cassette, subfamily C (CFTR/MRP), member 1	-	ABC transporters	ko02010	PMID: 28812709
			Sphingolipid signaling pathway	ko04071	PMID: 28812709
			Vitamin digestion and absorption	ko04977	PMID: 28812709
			MicroRNAs in cancer	ko05206	PMID: 28812709
			Antifolate resistance	ko01523	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_12478-3.13 global RNA-seq network