| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_1314-2.27 | BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2 | Bpl_scaf_1314 | 146590 | 224449 | - |
| CDS | |||||
| Bpl_scaf_1314-2.27 | |||||
| Transcript |
| Bpl_scaf_1314-2.27 |
| Protein |
| Bpl_scaf_1314-2.27 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00634 | BRCA2 | BRCA2 repeat | Family | Interproscan |
| PF01201 | Ribosomal_S8e | Ribosomal protein S8e | Family | Interproscan |
| PF09103 | BRCA-2_OB1 | BRCA2, oligonucleotide/oligosaccharide-binding, domain 1 | Domain | Interproscan |
| PF09104 | BRCA-2_OB3 | BRCA2, oligonucleotide/oligosaccharide-binding, domain 3 | Domain | Interproscan |
| PF09121 | Tower | Tower | Domain | Interproscan |
| PF09169 | BRCA-2_helical | BRCA2, helical | Domain | Interproscan |
| PF21318 | BRCA2DBD_OB2 | BRCA2, OB2 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002093 | Repeat | BRCA2 repeat | Interproscan |
| IPR012340 | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR015187 | Domain | BRCA2, OB1 | Interproscan |
| IPR015188 | Domain | BRCA2, OB3 | Interproscan |
| IPR015205 | Domain | Tower domain | Interproscan |
| IPR015252 | Domain | Breast cancer type 2 susceptibility protein, helical domain | Interproscan |
| IPR015525 | Family | Breast cancer type 2 susceptibility protein | Interproscan |
| IPR022309 | Family | Ribosomal protein eS8/ribosomal biogenesis NSA2 | Interproscan |
| IPR036315 | Homologous_superfamily | BRCA2 helical domain superfamily | Interproscan |
| IPR039411 | Family | Ribosomal biogenesis NSA2 family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11289 | BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000724 | Biological Process | double-strand break repair via homologous recombination | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006281 | Biological Process | DNA repair | Interproscan |
| GO:0006355 | Biological Process | regulation of DNA-templated transcription | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K08775 | BRCA2, FANCD1; breast cancer 2 susceptibility protein | - | Homologous recombination | ko03440 | PMID: 28812709 |
| Fanconi anemia pathway | ko03460 | PMID: 28812709 | |||
| Pathways in cancer | ko05200 | PMID: 28812709 | |||
| Pancreatic cancer | ko05212 | PMID: 28812709 | |||
| Breast cancer | ko05224 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_1314-2.27 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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