Gene detail

Detailed information of Bpl_scaf_1371-5.6 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_1371-5.6	HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN	Bpl_scaf_1371	526031	539649	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_1371-5.6

ATGAGAGGAGGAGGAGGAGGAGGTGGAAGAGGAGGACCTAAAGGCAGATTCAGTGACCCAAATGATCCAAATTCAGAACAGTACAGAAAACTATTTATTGGAGGTCTGAGTTATGAAACAACCGATGCAGGATTAAAAGAGCATTTTGAAAAATGGGGAGAAGTAGTGGACTGTATTGTTATGAAAGACCCACAAACAAAAAGATCACGAGGGTTTGGATTTATCACATACAAAGAATCTCAAAGTATTGATGACGCCCAGGCTGAAAGGCCACATGAACTTGATGGAAGGAAAGTTGAAACAAAGCGAGCCATGCCCAGAGAAGAATCTGGTAACCCTGATGCACAGCGCTCAGTAGATAGAATGTTTGTTGGTGGAATGAAAGACGGAACGACGGAAGATGATATACGTGAGACATTCCAAGACTATGGCACCATTAAAGAGATTAGTGTGATTAAAGACAAAGCCACAGGAAAAATGAAGGGTTTTGCCTTTGTAACATTTGCTGATTATGACAATGTGGACAAAGCTGTATTGAAGAAGAACTTTTTATTGAATGGAAAAAATGTTGATGTTAAGAAAGCACATCAAAAAGACAGTGAGGGAGGTGGTGGTGGTGGTGGACGAGGAGGAAGAGGTGGTGGTGGGGGAGGAAGAGGAGGAGGACATGGAGGTTTTGGAGGTCAAGGAGGTTTTGGACAAGTAGGTGGTTTCCAGCAAGGAGGATATGGTGGAGACAGCTATGGTGGTGGTTACAGCCAAGAAGGCTATGACCAAGGTGGTTATGGTGATGGTGGATATGGAGGTGGTTATAATCCAGGTGGAAACTGGAACCAGTTTGGACAGGATTACAGTGCCTCTTACGGTGGAGGCCCAATGAAGGGATATGGTGGGAACCAGCCTAGAGGGGGTGCTGCACCCTATAACAGTGGTTATGGTAGAGGTGGAGGAGGTTTCAATCGGTAAATCATCATCATATTCATCATTAGTTTTTCAGGCAGGTATATAGGAAGTAGCAGAACCATAGGACATTGTTAATCATCCCATTGTTAAGGAGATTAGAGGCTAAGAAATATTGACTTCATTCCAACTTGATTAAGACAGAACTAGAATTAGGATAAGCAACACTATACCATTTTATAAGCATCCCCATGTTAGTTAGATGCTAGGAAGTAATGATGCTCATCTTCAATAAGGATTTAACTGGTTTTATAAGCATCCCCATGTTAGGTAGATGCTAGGAAGTAATGATGCTCATCTTCAATAAGGATTTAACTGGTTTTATAAGCATCCCCATGTTAGGTAGATGCTAGGATGTAAGCAGCGATTGTAGAGATTTCTGTGATTTTTGTTAATAAATTTAGTGAATTGGTCATAAAAGACCTAAAAATAAAATGTCATGGATTAAGAATATGTATTCCTGCTTGAAAAACTTACCATTGTATCCAGCTACTCTTTGTCATCAATTTGTGATTATCGTCATGTAACTCATTTTTATTAGAAAGTAAAAATTTTAATTTTACGGAACATTTGTCATCCATCTGTAAATATAATTTTCATTGTCACCTCTGATCAATAAAATATAGAAAATCTGAACCCAGTTTCTTGCTTTGTCATGTCATAAGGGGGTATTTGGGGTTTGTTGTTAGTATTTTGCCCCTCATGCTTTCATGTAAACTGTAAGTAGAATTTTCCTGATGACTTGTATGACCACATTTGTTGTAAAGTGTCATTTTTGTATAAATATGTAGTCCATTTGTAGTGCTTCGAAATTTTTGTTTCACTTGATTTATCCATGGGAAAATTGTCATGAAATTTTACTTGCTCCCAACAATATTACCCTATTTTCTAGTAATGTGTATTATTTGCTATAGATGGTAATACAAATAAAGTTTTATTGTTCCTCAGTCATATAAACTGTAAATAGAATATAACATCAACATTTTATTGACTAGAACATTATATTACTACCTTACTTTACACTTTCCGGTCCATTTTTTTTTCTTTCCACGGGAAATGGGAATTTCGAAACCCTGATTTGACAAAAGTTCATGGGTCAAGTTTAATTTTCAATATAATTAAGACTTCCAAATCAATTTAATAGATCATAGATTTTAATGTATTTGTATTAAAATGTTTTCCATGTGGTTGTAGGAAAGGTATCAAAAACAAAGGTTATTTTGATATAAAACCATGTTCCTTTAGAAACTCAGATCCTCGAAATGATAATTTGAATTTACTGGTCTGAATCAAATTCTTGAATTTATTTTTATATAGTTCTTTAAAAAAGTCTGAAAAATTTACTGGTCCAAACAAAGTTTTACTAGTCATGGGCCATAGGATTGGTGCTCATCGTGGGGACTGAGACACTATGCAAATTTCAATTATTTCTTTTGAATTATCCAATCTTGATATTGTTTAGTGTGTCTTTTGAGAAATGGGGAGTTTCTCTCGATGTCATGTTGTTATTTGTATTATTTCTTGTATCTAATCTGGCCTTACTGTCATAAAACCTTTGGGCACAAGTTTTCTACCCATACTCTAAAAACATCCAATCAGAATGCTGTATGCTGATGATGATAGAGAATAGGAGTATAAAACTCGTACACTGGAAAGTTTTATGGCGGCAAGTCCCGATTAAATATATTTAACATCTCTAATCGTTTGACCGGATAAACTTGGAATTTTCTTCAGGTGTAAGATTTTTCCAGTCTTGTTTTTGTTGTTGAGGCTATTACGTTCCAATGGACACGAGGTTAAATATTGATTATGTATGAAGTAACAATTCAGTGTACTTGCCCGAAAGCCGAATTTAGAAAATGTTTAAAATGTTTCTATTTATTCAAGCAAATTTGTTCATAATTTTCACTTGTCCGAATCCAGTTTTATGTGTCCCAGGCTTCAAGCAAGTGGGTTAGCGCAGACTGCAAACTATATGGACGATTATTTAATGGTTCTTGGTAGGATATACCACCACCATAATTTTACATATGGATATATTGGAAAATGTTTTTAGAAAAACCTTTTCAGAAATTGATACATTGATGGAGCGAAAACTAGACATAAATTAGCATTGGATAACATACAGATTATTTATAAGCTCAGATGGTCCTCTAGATTTGTAAACAAAATGTATGGATATTTGTTGATATAGAAATATGTAAAAATTGTAAAAAAAAAAAAAAAAAAGAAATCCTCCATGGATAGTTTACAGTTTGAAAACTTGTTGGAAAGAAAATTTTGTGTTCATGTAATATGGAATATTTTTGTTGTGAAAGTTAAGTTATTTAGAAGAGATGTGAATAGGATTTTGATAGGAGATAAGAAGAAACAACTATACATTTATAAGGCACCATTAGTCTGTTAGGAGCACCAACGAGCAGGGACAATATTAGGTTAAGATTAGTAAGGCAAGGTAGGTTCACTTTTCATTTAATATTATTTTTAACTTTTGGGTGGTATTCAAGGAGCTATGATGACTTTAAAGTGAAATGTTAAAATTTATTGATGAGGTTTGCAAAAATTGAAATAATCTAAAATTGAGTGTATGACAGCAAGTTTCTCCTCTGGTCTTACAAGCTAAATAAAAACGGTAAATTTATTTTAAAAACAGATTTGAAGATGTAATTATAACCCTCCGTTTGACACACCATTATTTAACTGAGAAGCTGTTAAAGTTGACATTTAACACCAATCAATAAATCATCTCTCCTTTTGGTATTGTGATTTAAAGCATATTTTTCATTCTTTTGCTTGCATTTAAAAAAATTTTTTTTTTAAGACTTGCATATCATGTGTCTGAGAGAAGAGGGTGATTTTCCAAGTAGGTCTATTGTGTCCTTTGGTAAGAATTGGTAATCAATTAAATAAAGAGTTGTTGCCCCTTTTTAGCCGAGTTGCAACGAAGTTGCAGTCGACTTATGTTTTGGCGAAAGGCTGGCGGGCGGGCGTATGGATATCTTTGTTAACGCAATAGCGCTCTTAGTTTTTGGCCGATCAACATAATTTTTGGTAGGAAGCATTATTACACTATTATGTAGAGCTAGTTCAAAATTCAGATTAATCTATTGTTTTTTTCTTGTAAAATCATGGTTTTTTTTTTTATAGAAAAAGTACATATTTTGAGAATTATCTTTGTCAATGCGATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48026	HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12741	HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3	-	Spliceosome	ko03040	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_1371-5.6 global RNA-seq network