Gene detail

Detailed information of Bpl_scaf_15282-11.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_15282-11.9	VACUOLAR ATP SYNTHASE SUBUNIT AC39	Bpl_scaf_15282	1091085	1104913	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_15282-11.9

GGATAGTAGTAACACGTTGATAGTCGACAAGGCATTGTGCCTAAATGGAACATTGCGTAATGTGAATAGTTGATTTTAAAGTGGTGTAGCGTCATTGTCTCCGCTGATTTTAATCACGCAAACGCCGTTTCTCGGAATTTACAAGGTATTCGTATCGGTACATCCGGAAATTCCATTAACTATAATTTTTAATTTTGTAAGCCGTGTTTGCATATTGACCACCCCAAAATATCCGGATTTCGTATTTCTCTAGAGTTTTCAATTGTAGAATACGGCATCTCAAAAAAGGTCACGGATGTCTCATGTGACTTCCGCATCATCATAATTTTCATGAAAACAGAAAATTGATCCAACATGTATTCGATGCCAGAGCTGACGTTTAATATTGACCATGGCTATCTTGAGGGACTAGTGAGAGGCTTCAAAGCAGGGATTTTAACACAAACGGATTATTTGAATTTAGTACAATGTGAAACATTAGATGATTTAAAGTTACACTTACAAAGTACGGATTATGGTAATTTTCTTGCCAATGAGCCAAGTCCATTAACAGTATCGGTGATAGATGATAGACTGAAGGAGAAACTGGTTGTAGAATTCCAACATTTAAGGAATCATTGTCTGGAACCATTAGCCACATTTCTAGACTACATAACGTACAGTTATATGATAGATAATATTATACTGCTGATAACAGGGACATTACACCAAAGACCTCTAAGTGAACTTATTCCTAAATGTCATCCGTTGGGTAGCTTTGAACAGATGGAAGCTATACATATTGCATCAACTCCAGCAGAGCTCTACAATGCAGTATTAGTTGATACACCATTAGCTCCGTATTTCATTGATTGCATATTGGAACAAGATTTGGATGAAATGAACACTGAAATCATCAGAAACACTTTATATAAGGCTTATTTAGAAGATTTCTATGCATTCTGTCAAGAAACAGGTGGAGCAACAGCAGACGTCATGTGTGAAGCATTAGCATTTGAAGCTGACAGAAGAGCTTTTATCATTACCATTAACTCTTTTGGAACTGAGTTGACAAAAGATGACAGGTCAAAACTTTATCCACATTGTGGTAAGCTGTATCCAGCAGGACTGGCAAGACTTGCCCAGGCAGATGATTATGACCAAGTCAGAGCCGTGGCCGATTGTTATGCTGAATACAAAGAACTGTTTGAAGGAGCTGGAACTAACCCTGGTGACAAAACATTAGAAGACAAATTTTTTGAACACGAGGTAAAACTGATGAAGAATGCATTCATGCAGCAGTTTCACTTTGGTGTGTTCTACTCGTATGTCAAACTGAAGGAACAAGAGAACCGTAACATTATCTGGATATCAGAATGTGTAGCACAACAACACAGGGCCAAAATTGACAGTTACATTCCAATATTCTGATCAGATCTGTTAACAAAGGGGAAACAAAAACAAAACTTTTTGTAAAAAAGGGAGATAAGTTTGTTTGTCTTTTTTTTTCTGATCATTCCAGACATTTAGAAAAGTGATGACTATCTTATCTTAATGGTATTAGAATTATTTTTTTTTAATGAATAGATGTTTAACTATTCAAATCAGCAAGTGTACTGTATTAATTAAGGAAGTAAAGGGGAATTAATTAAAAAGTCCCCCTTTGTCCCTAAGGATTATTTTATTATCTCCCTTATATTATGTGTCAATTACTAGGGGGGATACTTTACTGATATTTCTCATCAGACAGGGTTAAATGTGTAAATTATGTTAATCTAATATGAACATAATTACAGTTTAATTTAGACAGTAGGGTTATGTTAGGTATTAATATATATTCCTGGTTGTTGTATTTAAATAGTGCTATATGGGGGATATGTGTATTTTTATGAAGTTGGAACTAAAATGTTTCAGTAGGAATTGCACAATTCTTGTTTCGTTCCCCCTTCCCCCCTCATTTTAATCTCAATGAATATGATATACAGTAAAACAGTTTTGTAGGAAGACAACTGATCAACAATATATTAGTTAAAAGAAGTAATAGTGAATTATATGAAGGGGGCTGGATGGATAATGCACATTTTCCATTTTGTATTCTAAAAATCAATGAAATTTTCTGGAAATGAAGAAAATTGTTAATTCAGCCATATTATCCCAAAAATCAAACAGCCTTGTCATACATTTTTTCTTTGAATAATGTAAGATCTACGTACATACATATTATTAATTTAGGTATATACTGTTTTTGGATATACTGTAACCACCCTATTTGAAAAAAAATGTTGTGTTTGTGATATAAAAATAAGGAACAAATATGATTTATTTATTGAATTTTTGCAATACAACACTTTGAGCTATTTTTTGTTGTTATATCATGGCGATCTGAAGTGACGAAGGAAGCTGGAATTCCCAAAGAAAACCATCAAGTGTTAGCAAATACCAGGAATTCTTTCTTATTTTATATTTTATATTGACTTTAGATGAAACTTTGCAGGATGTAATGCTTTTAATAATACAGTGAAACTCTAGTCTAAAACTGAACCCTGAATAAAACAGAATCCTATATAGTTTACTGTATAGTAGTTAATGCCACTTTCAACAATATTTCATGGAATCCTATATAAAATGAACTTAAAATAAAGTTCCAGCATAGGAAATCTTTTTTTAACTTTAACCTGTATAAAACAAACAACTGTCTATTCTGAATACATAAGTTAGTCCCAAGGAGGGGGTCCGGTTTGGACAGGTTTCATTGTATGAGCGATTTGGAATTTTAATATGGACGGATATGAATATAAATCTGTTTGTCAAAGCTACTACACATCTCCACTTGTTCCTGATGATGTATAGATATTCTAGTCATTGTATTATTCTAAGAAATTTAAGGTACAAACGTTAAGGTTGTGTAGGGTTTTAATTTCGGTACATGATTCATTTTGCTCATGACATTGCTAAGACAGCCGATAATTCAGTTATAAAATAATGTAATCTCTCAACCAAATTGAACCAATGAAATAGTTCAATTCACATTTTCACAATTCCACTTACCATGTCATAAATTTGAGGTTTATCCAATCATATTCTTGGTGATCCAATATATTATGTTATTAGTGTAATTAAAATTTATATGTTATCTCTCGACCAATGAAATTGTACAATTTACATTTACACAATACCAAAAAGTGTGATGTCATTTGAGGCTTAATTATCCAATTATATTTTTGGTAATCTAATTATTTTATAGTGGATTAAAATTTAAAATAGCAATATTCTGGTCACTTTTTAACAAAGCCTCCTTAGATCTTATGTATGACTTGACTCCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01992	vATP-synt_AC39	ATP synthase (C/AC39) subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002843	Family	ATPase, V0 complex, c/d subunit	Interproscan
IPR016727	Family	ATPase, V0 complex, subunit d	Interproscan
IPR035067	Homologous_superfamily	V-type ATPase subunit C/d	Interproscan
IPR036079	Homologous_superfamily	V-type ATP synthase subunit c/d subunit superfamily	Interproscan
IPR044911	Homologous_superfamily	V-type ATP synthase c/d subunit, domain 3 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11028	VACUOLAR ATP SYNTHASE SUBUNIT AC39	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005765	Cellular Component	lysosomal membrane	Interproscan
GO:0005769	Cellular Component	early endosome	Interproscan
GO:0007034	Biological Process	vacuolar transport	Interproscan
GO:0007035	Biological Process	vacuolar acidification	Interproscan
GO:0016471	Cellular Component	vacuolar proton-transporting V-type ATPase complex	Interproscan
GO:0033179	Cellular Component	proton-transporting V-type ATPase, V0 domain	Interproscan
GO:0033181	Cellular Component	plasma membrane proton-transporting V-type ATPase complex	Interproscan
GO:0046961	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:1902600	Biological Process	proton transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02146	ATPeV0D, ATP6D; V-type H+-transporting ATPase subunit d	-	Oxidative phosphorylation	ko00190	PMID: 28812709
			Phagosome	ko04145	PMID: 28812709
			Lysosome	ko04142	PMID: 28812709
			Collecting duct acid secretion	ko04966	PMID: 28812709
			Synaptic vesicle cycle	ko04721	PMID: 28812709
			Viral carcinogenesis	ko05203	PMID: 28812709
			Rheumatoid arthritis	ko05323	PMID: 28812709
			Vibrio cholerae infection	ko05110	PMID: 28812709
			Epithelial cell signaling in Helicobacter pylori infection	ko05120	PMID: 28812709
			Tuberculosis	ko05152	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_15282-11.9 global RNA-seq network