Gene detail

Detailed information of Bpl_scaf_15856-1.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_15856-1.9	POLY A POLYMERASE CID PAP -RELATED	Bpl_scaf_15856	124666	153510	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_15856-1.9

ATGCCTCGCTCAAAAGGTCGTGGCGGAATGTTCGTGATATGCGATGTTTGTTCTGCAACAATATCATCAGCCGAGGAATATGATCGTCATATGGCAGGGAAACGTCACAATGAAAGACTACAGGCATATATAGAGAAGAAGAAGACAGCAGAATGCAGTGTGTTTGTCAAAGGATTTCCTCCAAGAACAGCGGAGGATGAATTGATGTTGTATTTCCAGAGCTTTGGAATGATTAACAAAATTGTGATGGAAATCCATGAGAAAAAGAAGCTGCCTGCAAGATTTTGCATTATAGAGTTTGCAGACAAGGAGAGTGCAAAACAATCGGTGGAATATGAACCACATATTCTCAACAGTTCCCGTCTGACAGTCAGACCTAGAAGCTTTAAAGAGCTCAAACTCCAGCCATACTTCCCTTGGGAAAAGGAAAAGGAGGAGAGGGATAACAATTTGCCATGGAACCAGACAATGGATGAAAATATGGATATGGGGCCACAAGGTTTTGGCCCTCCGGGTGGCCCAGGTCCTAGTTTATTGGGGGACGGACCTGGACCTGGCTCATTTAGAACAGATGAAGAGTTTTATATGGATGATGCATTTGATCACGGTGGGGGTTATGGAGGGCAGTGGATTGAAGGAGGACCAAGAGGTGCATATGGGCGTGGAGGGCAAAGAGGAGGATTTGGTGGAAGAGGTGGATATGGTGGTCCAGGTCCAGGATTTGGTGGTCCAGGATTTGGTGGTCCTGGGTTTGGTAATTCCGGATGGGATGACAGAGGAGGTGGTCCAGGTGGCTATTCTGGTAGAGATGGACCAGGAGGATTCAGAGGTGGTCCAGGAGGTTTCGGCCCACCAGGTCCAATGGGACCTCCACCACCATCACTAATGGAAATGGCCCAATCTAGTGGTACTAAGAGGATGAAGGGTATGCCATCTCTGCCTGGAATGGGGAAGAAAGCAAGAAAAGGAAAGGGAGCTGATGATCCTCAGGATCCTCTACCTATTACCTTAAAGGAGCTGAGAAAGAAGTTTAATGAAGCAATGTGTATCACGATACAAAGTCAGATGACCTGCTTAGTAGAGTTGATACAAGCCAGTCCAGAAGAGCTGCAACAGAGATATTACATCTGTAAAGTGTTAGAACAGGCCTTGTCACCTTTCTTTCCTGGAGTAACAGTTAACCAGTTTGGGTCATCAGTTAATGGATTTGGTTTGAAAGGATGTGACATGGATGTGTATCTAGGTTTAGATAGTATTGGAATGTCGGTACGGAGCACGAGTCTCGATTTACCATACACAAGAGATATCCACTCCTTAAAAAAATCTACTGGACCCCTAACACAGGTTGATGTGGATGGAATGACAAATGGAGATAAATGCAAGCTGATTTCTCGTATACTGATTGAACATGCTCCAGCGTGCAGCAACACTCAAATCATACCAAGTACACGCTGTCCAATCATACGGTTCAAACATGAATCGTCAGGCATCAAATGTGATCTCTCTCTGGACAACAAGATAGCTTTGCAGAACACCAGACTGTTACAAGCTCTTAGTCAGTATGACCCACGTGTCAAGCCGCTAGTGTACACACTAAGGTTTTGGGGAAGACTGAAGCAGATTGCTGGAAATATTAAGACAGGACCCAGGATGACCAACTATGCCCTGACACTGATGGCTGTCTATTATCTACAGAACACCAACCCAGTGACTTTACCTACTATCCAGTCATTGGCTGATTTATCATCAATGAAGACTAAATGTGGGCCATGGGATTGTTCCTTTGTTGGTTCAAACTTCATTCCACCAACACACAATGTACAGACTTGTGAGGAGCTGCTTGCTGGATTCTTCAAGTTCTTCTCTCAGTTCGATTTCAAGGCTAACGCTTTGTCAATCAGGAACGGGTCAATTATACCAGTGGCTAAGATAACTCTTGATAACACGATGAAGCTTGCTCCTATGAATATTCAGGATCCCTTCGTCCTTGACCACAATGTGGCACAGAACCTTAATGAAACCATCCGCGATTTGATGATCAAGGAATTTTCCATCGCTGCTTACAAAGCTGAGAGGTGGCAGGCAATTGAGTTTGCCACAACCAAGTGTCTGTTGGATATTCTGGATGATAGAATACCTGAAGGTTTTGACGAAGAATTGGCATTGGCTAGCATTCCAGGAATGAAGCTGGGAGAATATCAGTTCGTTGTGGAGCTTAAATCACCTACTTTGTCTCCTGAGCTTTTGAGAACACTTGAAGCAGAAGGGGACCTGTACAAGGCATGGAGTAAGAAGATGATACATTTCATATATGATGTAATTGAAAGAATTATTATGTTTGACAGCGAGGTCATTTCAACAAATATGCCTGAACCTGTTAAAAAATCCAGAAAGTATAATCACAAAGAGAAGTCGGATAGAAGTTTGAGAGAAAGTTTGAAGACTCCAAAAATTGAAGATGAAGAAGAAGAAAATGGTGAAGGGGAGATTACTGTAAATGTCGAAACATCGGAGGAGGAGGTCAGGGAGGTAAAGGTCACAATACCAGAGGTGGTTGAGGAGGAGGTCGATTTGACTAAAGATCCAAGGAGGGAGTTGTACCAGGATGCAGATTATTACATCGACATGAATTCGTTCATAATGTGTAGAGTTTGGGCTGAACGTAAGAAACTTGGCAACATGCTTAAGGAACGTGGATTTACAGAGAGTATTGAACTTGAACAATCCATATCGGAGAGGCTATATTACGACAACCACTACGAGAATAAACCATCGATAATGGAGATGAGGATAATTATGAAATCGGTCATCCTTAACAACAGGGCAGAAATTATGGTCGACGTTTCTGGTCCACCGGGCCAGGGAGAATTCCACTGTGTTTATCATTACCTGAAAAAGTTTGTCATCAAAATGGCTGACAAATTCTTTGACAAACAAATACCAGATCTATTTTAA

Transcript

Bpl_scaf_15856-1.9

CCGGAAAAAGCAGGAGCTTCCCGGTGTCTTGTCTTCATCAACGCGTTGTGAAAAATAAGCCTGCTATCTCCATTTTAACTAATATATTCGTCAATAATTCATTCATTTCAAGCATCCCCGAACGTAGCTTCATACTGGTTTTTCTAATCAGCTTAGCCTGACATATAAAACCAGCCATGCCTCGCTCAAAAGGTCGTGGCGGAATGTTCGTGATATGCGATGTTTGTTCTGCAACAATATCATCAGCCGAGGAATATGATCGTCATATGGCAGGGAAACGTCACAATGAAAGACTACAGGCATATATAGAGAAGAAGAAGACAGCAGAATGCAGTGTGTTTGTCAAAGGATTTCCTCCAAGAACAGCGGAGGATGAATTGATGTTGTATTTCCAGAGCTTTGGAATGATTAACAAAATTGTGATGGAAATCCATGAGAAAAAGAAGCTGCCTGCAAGATTTTGCATTATAGAGTTTGCAGACAAGGAGAGTGCAAAACAATCGGTGGAATATGAACCACATATTCTCAACAGTTCCCGTCTGACAGTCAGACCTAGAAGCTTTAAAGAGCTCAAACTCCAGCCATACTTCCCTTGGGAAAAGGAAAAGGAGGAGAGGGATAACAATTTGCCATGGAACCAGACAATGGATGAAAATATGGATATGGGGCCACAAGGTTTTGGCCCTCCGGGTGGCCCAGGTCCTAGTTTATTGGGGGACGGACCTGGACCTGGCTCATTTAGAACAGATGAAGAGTTTTATATGGATGATGCATTTGATCACGGTGGGGGTTATGGAGGGCAGTGGATTGAAGGAGGACCAAGAGGTGCATATGGGCGTGGAGGGCAAAGAGGAGGATTTGGTGGAAGAGGTGGATATGGTGGTCCAGGTCCAGGATTTGGTGGTCCAGGATTTGGTGGTCCTGGGTTTGGTAATTCCGGATGGGATGACAGAGGAGGTGGTCCAGGTGGCTATTCTGGTAGAGATGGACCAGGAGGATTCAGAGGTGGTCCAGGAGGTTTCGGCCCACCAGGTCCAATGGGACCTCCACCACCATCACTAATGGAAATGGCCCAATCTAGTGGTACTAAGAGGATGAAGGGTATGCCATCTCTGCCTGGAATGGGGAAGAAAGCAAGAAAAGGAAAGGGAGCTGATGATCCTCAGGATCCTCTACCTATTACCTTAAAGGAGCTGAGAAAGAAGTTTAATGAAGCAATGTGTATCACGATACAAAGTCAGATGACCTGCTTAGTAGAGTTGATACAAGCCAGTCCAGAAGAGCTGCAACAGAGATATTACATCTGTAAAGTGTTAGAACAGGCCTTGTCACCTTTCTTTCCTGGAGTAACAGTTAACCAGTTTGGGTCATCAGTTAATGGATTTGGTTTGAAAGGATGTGACATGGATGTGTATCTAGGTTTAGATAGTATTGGAATGTCGGTACGGAGCACGAGTCTCGATTTACCATACACAAGAGATATCCACTCCTTAAAAAAATCTACTGGACCCCTAACACAGGTTGATGTGGATGGAATGACAAATGGAGATAAATGCAAGCTGATTTCTCGTATACTGATTGAACATGCTCCAGCGTGCAGCAACACTCAAATCATACCAAGTACACGCTGTCCAATCATACGGTTCAAACATGAATCGTCAGGCATCAAATGTGATCTCTCTCTGGACAACAAGATAGCTTTGCAGAACACCAGACTGTTACAAGCTCTTAGTCAGTATGACCCACGTGTCAAGCCGCTAGTGTACACACTAAGGTTTTGGGGAAGACTGAAGCAGATTGCTGGAAATATTAAGACAGGACCCAGGATGACCAACTATGCCCTGACACTGATGGCTGTCTATTATCTACAGAACACCAACCCAGTGACTTTACCTACTATCCAGTCATTGGCTGATTTATCATCAATGAAGACTAAATGTGGGCCATGGGATTGTTCCTTTGTTGGTTCAAACTTCATTCCACCAACACACAATGTACAGACTTGTGAGGAGCTGCTTGCTGGATTCTTCAAGTTCTTCTCTCAGTTCGATTTCAAGGCTAACGCTTTGTCAATCAGGAACGGGTCAATTATACCAGTGGCTAAGATAACTCTTGATAACACGATGAAGCTTGCTCCTATGAATATTCAGGATCCCTTCGTCCTTGACCACAATGTGGCACAGAACCTTAATGAAACCATCCGCGATTTGATGATCAAGGAATTTTCCATCGCTGCTTACAAAGCTGAGAGGTGGCAGGCAATTGAGTTTGCCACAACCAAGTGTCTGTTGGATATTCTGGATGATAGAATACCTGAAGGTTTTGACGAAGAATTGGCATTGGCTAGCATTCCAGGAATGAAGCTGGGAGAATATCAGTTCGTTGTGGAGCTTAAATCACCTACTTTGTCTCCTGAGCTTTTGAGAACACTTGAAGCAGAAGGGGACCTGTACAAGGCATGGAGTAAGAAGATGATACATTTCATATATGATGTAATTGAAAGAATTATTATGTTTGACAGCGAGGTCATTTCAACAAATATGCCTGAACCTGTTAAAAAATCCAGAAAGTATAATCACAAAGAGAAGTCGGATAGAAGTTTGAGAGAAAGTTTGAAGACTCCAAAAATTGAAGATGAAGAAGAAGAAAATGGTGAAGGGGAGATTACTGTAAATGTCGAAACATCGGAGGAGGAGGTCAGGGAGGTAAAGGTCACAATACCAGAGGTGGTTGAGGAGGAGGTCGATTTGACTAAAGATCCAAGGAGGGAGTTGTACCAGGATGCAGATTATTACATCGACATGAATTCGTTCATAATGTGTAGAGTTTGGGCTGAACGTAAGAAACTTGGCAACATGCTTAAGGAACGTGGATTTACAGAGAGTATTGAACTTGAACAATCCATATCGGAGAGGCTATATTACGACAACCACTACGAGAATAAACCATCGATAATGGAGATGAGGATAATTATGAAATCGGTCATCCTTAACAACAGGGCAGAAATTATGGTCGACGTTTCTGGTCCACCGGGCCAGGGAGAATTCCACTGTGTTTATCATTACCTGAAAAAGTTTGTCATCAAAATGGCTGACAAATTCTTTGACAAACAAATACCAGATCTATTTTAAATAATGAAACACAGTTTGTCATCAAAATGGCTGACAAATTCTTTGACAAAGAAGTACCAGATATATTGTAAATGAAATGCAGAAGGCTTTTAGTTTATAATCAATTGGACATGTGGATTGAGCATGGGATAATGCTTGTTGTATTTTTTCATCAATTTTCTGTTTGTTGTATTTTGTTTTGATCGAGGAGTATTTTGTCAAATAAAAACAATCATTTTTATATTTTTTTTTGTATGCAATTTAGATTATGACCAGCAAATTAAATATTCAATGATGTTGTCTCAATATGGTACTGAAATTTGAGCACAACATTAAACATATTTAAATTTGAACACAAGATTAAATTCCACTGAAATTTTGAGCACAACACTAAATATCATGGAAATTTGAACAACATTACCATTAAATGATGTGAATTAAGGCAAAATTCACTGCTTTTTATTTCAAAATTAATTATTGTTAAAATATTTAAATAACCATATACTAAAATCAGGGAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF03828	PAP_assoc	Cid1 family poly A polymerase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR002058	Domain	PAP/25A-associated	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR043519	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12271	POLY A POLYMERASE CID PAP -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006378	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0016779	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0031123	Biological Process	RNA 3'-end processing	Interproscan
GO:1990817	Molecular Function	poly(A) RNA polymerase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18709	TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase	EC:2.7.7.19 EC:2.7.7.52	Messenger RNA biogenesis	ko03019	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_15856-1.9 global RNA-seq network