Gene detail

Detailed information of Bpl_scaf_16360-0.16 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_16360-0.16	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL	Bpl_scaf_16360	6079	30229	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_16360-0.16

CTGTAATGTACATTGTTTACTTAAATGCTACATGTATACAGGGATCAATATTTAGGTCGTAAGTTTCTTCGTTGCAGTTAATTAATGAAGTACATATCAGTGTGTCGTGGCTTACTTTGTTCTGTCAGAAGATATACTAACAGAAAGCTGGACGATTTAACTACCACTAGATCTTACCATAGGCTGGTACATGATAAAGCCTATGTTAACGGACAATGGGTTGAAGCAAACAGTGGAAAGACGTTTGATGTATATAATCCGTCAACTGGAGAGAAGATAGGATGTGTCCCTGATATGAATACAGATGATACAGAAAAGGCTATACAGTATGCTGCAGAAGCATTTGAAACTTGGAGAGACACAACAGCTAAGGAACGAAGTGTTATCTTAAGACGATGGGTTGATCTGTGCAACGAAAACAAAGAAGATTTAGCGAAAATCTTAACAACAGAAATGGGTAAACCACTCCAAGAATCTATTGGAGAACTAAACTATGGGATAGGTTTTCTGGAATGGTTCTCTGAGGAAGCCAGACGAGTTTATGGGGATATCATACCATCACCAATTAAATCAAAGAGGCTACTGGTACTCAAACAACCGATAGGTGTCGCTGGAATGATAACACCGTGGAATTTCCCACATGCTATGATAACAAGGAAGGCAGGACCGGCCATAGCTGCAGGGTGTACAGTAGTGCTAAAACCTGCGGAGGATACACCTTACTCAGCCTTAGCTCTTTGTGAGCTAGCAGAGAAAGCAGGATTACCTCCAGGTGTTTTAAATGTTGTTACCAGTAGTAGAGATAATTCTAGTGAGGTAGGGAAGACCTTATGTACCAGTCCTACAGTCAGACAAATATCATTTACTGGATCAACAGCAGTAGGAAAGATATTATTACAACAATCAGCCTCAACAGTAAAGAAAGTTTCTCTAGAAAATGGTGGCAATGCTCCCTTTATAGTTTGTGAATCTGCTGATATTGTCAAGGCTGTTGCTGGATTAATGGGTAGTAAATTCCGAAATACAGGCCAGGCCTGTATTTGTGCAAACAGGGTACTGGTACAAGATTCTGTCTACGACACATTTGTTGACACATTAGCAAAAATTATGGAAAAAGAATTGAGAATTGGTGACGGATTTGATCCTAAATCAACCCAAGGACCTCTTATAAATCAACGTGCAGTTGAAAAGATTGAGTCTTTAGTGACAGATGCCAGGACGAAAGGTGCCAGGATAGTTGTTGGTGGTGCAAGAAAGGAAGGAAACTTTTATGAACCAACATTGATTAGTGATGTGTCAACTAACATGAAATGTTATACAGAGGAACAATTTGGACCAGTGGCAGCTGTGATACGGTTCAAAACTGAAGAAGAGGCCATTTATATGGCCAACAATACAACGTCTGGACTTGCAGGGTATGTGTTCACAGAAAATATTAGTCAGATGTGGAGAATCACGGAAAAATTGGAATTTGGTATAGTTGGTGTAAATGAAGGACTTCCGGCTATGCCAGAAGCCATCTTTGGGGGATGGAAAGAGTCGGGACTAGGACGGGAAGGTGGCAAATATGGCCTTGAAGATTACCTAGAAATCAAATATGTTTGTATGGGTGGACTTGATTAATGAACATAAGTTGTAGGGTGAACTTGATCAATGAAGTTATCAATTGGTAAATAAAGAGCACCTAGCGCGTAGTCGGATGCTACTGAAGCAATATATTCAAGAATGGATTGTGCAAAAACAGTTATATTTACTGGACGAATCAGGAGGACCTTAATGGTATAAGAACAAATGTCTTTATGCTTTATTTACAAATTTTATAAAATGAACTTAGTATTATTGTGTTCACCACAACACAATACAAGTTGTATAACATTAGTTGTTGTTAATAATATATTGACCTACTTAGGTGACCTTTACCTAATATGACATTATTATATTTGCCTTACATACAACCACTATATTTGACTGGTTTTTTGGATTCAATGAATACAGAGTGTATATATTTAAGGGTGGGTGTAGGCCTGGGTAACCCCCAAATTTTCACATCGTTCAATTTTAAAAAAATTTGAATCATGGGATAGTTATGTTTAAATACATTATCTGCCAAAGTTTCAAAAAATTTCACAGTGCCATTTTCTCCATCGCACATCCTAAATATAGCAAGTTTGGGGGTATTTTTTTTTTTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00171	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010102	Family	Succinate semialdehyde dehydrogenase	Interproscan
IPR015590	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR016160	Conserved_site	Aldehyde dehydrogenase, cysteine active site	Interproscan
IPR016161	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR016162	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR016163	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR050740	Family	Aldehyde Dehydrogenase Superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43353	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004777	Molecular Function	succinate-semialdehyde dehydrogenase (NAD+) activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006807	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0009013	Molecular Function	succinate-semialdehyde dehydrogenase [NAD(P)+] activity	Interproscan
GO:0009450	Biological Process	gamma-aminobutyric acid catabolic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016620	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00139	ALDH5A1; succinate-semialdehyde dehydrogenase	EC:1.2.1.24	Butanoate metabolism	ko00650	PMID: 28812709
K00139	ALDH5A1; succinate-semialdehyde dehydrogenase	EC:1.2.1.24	Alanine, aspartate and glutamate metabolism	ko00250	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_16360-0.16 global RNA-seq network