Gene detail

Detailed information of Bpl_scaf_21273-0.0 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_21273-0.0	ATP-DEPENDENT RNA HELICASE	Bpl_scaf_21273	19837	47236	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_21273-0.0

ATGCTGAAAAAAGTATCAAGACATACATTTGTAATTAAAGATTACAAATTAGACGATCGTGATGCACAGTGTATTGCTGAATTTTCAAGTGCACGACAAGTCAAAGATGCAACATATGCATTTCAAATGCATAACAAAACATCAAAATTAAAAATAGTTTTACAGAAACAGGAAGTTAAACCTCGAGCTTCTACAGGAACAAAGCTTGCGCAATGTTTGGAAAAAATGACAGAAAAGGCCAGCGGTGTACTTGCCAAACATCAGGCTCAAATGGATATAATACAGGAGAGAATTGATGGCACAGGACATAAAAAGAAAGGGTTTATGGCTGTTGAAGATTACAAAAGAAAGCAGGAAGAAATGGAAGCCTTGCAATTTAAGTTACAAGAAATGGACAATCAAAAGAAGGAATTTAAAGGTTTTTTGAAATGTACTATTGCCAAATTAGAGGAAGTCAGAGCAGCGAAGAAGGTAGACACTGCTTTAAAGGCGATTTATTCAGCATTTAAGGTCGAGTGTACCAGGCTGAGAACAGCATTACCAATGTATGCAAACAGAACCGAAATAATGTCCATGATAACAAAGAACCAAGTCTCTGTTCTCCTTGGGGAAACAGGTTCAGGAAAAAGCACCCAGGTGGCACAATATATGTACCAAGCAGGACTGGCTAATGAAGGACTGATAGTATGTACTCAGCCACGTAAAATTGCAGCTATTAGTCTTGCAACGCATGTAGCTCAGGAAATGGGTTCTTCTGTTGGACAGTTGGTTGGATACAAAGTTGGTATGCAAATGAAAAAGTCACATGACACAAAAATAATCTATATGACTGACCACATGCTGCTGAACGAGTGTCTCAAAGATAAGAATTTGTCATCATACTCGTGTATCATCGTGGACGAGGCGCACGAACGAAGCATTTACACAGATTTACTTCTTGGAATGGTGAAGAAATGCATCAACAATCGAGGAGATTTACGAGTGGTTGTTACATCAGCAACTATTGATCCCGCTGTATTCGTTGATTATTTTGGAGGGAGTTGTCCAATATTGTCAGTGTCTGGTCGAATGTTTCCGGTTGATGTTATTTGGCCAGAAGATGAGGATATAAACGACAATTATGAACAGACTGCTGTAGAGAAAACTATACGAATCCACCAGTCGGAAGAAAGGGGGGATATTTTAACATTTCTGACATCTCCTTTGGAAGTTGAAAGATGTTGTATCTCATTCAAGGAAAATCTTTCCACTGAAATGAACTTTGTCTGTTTACCATTACATGGACGCCTGCAAGCAAATGAGCAGCAAAAGGTTTTTGATCCACCACCAAACGGAAAAAGAAAAATTGTCTTTGCCACAAACAGCGCAGAAACATCCATTACTATTCCAGGAATTAAATTTGTGATTGATACTGGTGTTGCAAAGGAAATGCAATTTGATCCCAAGAAAAACATCAGCACACTTAGTGTTACAAACGTGACCAAAAGTTCAGCGGATCAAAGGAAAGGACGTGCAGGTAGAACAGAGGCTGGGAAATGTTTTAGGTTGTATTCTGCCGAAACATACGATAAAATGGAGAGAAATTCCAGACCGGAAATCTTAAGAGTACACCTAGGGCATGCGCTGTTGAAACTTATGGAACTTGGTGTTGCACCCTTGGAATTTGATTTTGTACAAGCTCCACCACGAGCGTTGATGGACACTGCCATGGCTACACTTGAATTTGTAGGTGCTGTTGTTAACAAAACAATAACAGATTTGGGAAAATGGATAGCAAAACTTCCATTAGATCCAAAATTTGGAGCTTTTGTTCACGAAGCCATCAGCGAAAATGTCGGAATTGAAGCAATGATCTTGTCAGCATGCTGTGCCGCTGGAGGGTCGATATTCTATAGATCTGGAACTATTCAAGAGAAGAGTAAAGCTGATAAGCTAAAAGTAAGATTTTGTCATGAGGGAGGTGATTTGATGACTATGTTGAATGTTTACAGAGAATGGCATATGCAACCAGAGAAAACAAAGGGAAGTTGGTGTTCGGTGAATTCAATTAATGGAAAAGCGATTCGAGGTATCAGAGAAACGGTGAACGAGGTTTTAAATATTTTGACCAAAGAACCCGGAACAAAACTTAAATTTGAATTGAATTCACCTCAAGAAGTTGATATAAAATTGCAGAAAATGTTATTCAAAACATTTAGACGAAACATTTGCCATTATCTAGGACATGAAAGGGCCGGATACATTGTTGTAGAGAAGGATCAACAAGTCCAACTGTTTCCAGCGTCCAGTTTGAAATCATTAGGATTACAACCTGATTGGTTAGTTATAGAGCAAGTTCTTAAGACATCACGTGACTTTGCAATTAATGTAACAACTGTTTCGAACGAGTGGATTCTTGAAGCACTTGAAAAAGAGTGGTTGCAAATAGATTTAGAAAATGCTAAAAGGCAGAGGATTGAACAAATGGCTTTGTTTGAAGTGGGAGAACATGTTTATAAGGATTTTGTTGGAATACGTCACTCCAAATTAAGGGAAATAGAAGAGTCGATGAAGAGCAAAAACAACATGACAATCATTGAAGCCTCTAAGCAGCTTGGAGAAATTGTAGTTTATTCACAACAGAACTGTGGGCAAGAGTACACTAATTTGATAAGAGACCGTATAGCGCGCATCAAACAAAAAATGAAACAAGAAAAAAGCGAACAATTTTTATCCTCTTCTAACTCAGGTGTGAGAGTTATTATAGGAGCAGGTCTAAATATTGTAGACGTTTTGATGTCAGATGAATACAAAACCATTTTTGTAACGGGAATTCCTGATATCATCGAAGCAATGACAGAAGATGATATGGTTGAAACCTTTCAAAAGTTTGGCAAAATTGGAAGAATTGACCATTTTCGAAATAGCAAAAACAGGAATAATTGGGGGAAAATTACTTTTGAGAAGAAGGAAGAAGCTGAACTTGCAGTGCGAATGATGAATGGAAACTTGGATGTTGGAGCTCGACCAAGTATTGGTTTTCGAAGTGCTAATATCTTTTCTTTTCGTTCCAAATTACAGTGGTGTAGACGACCATCACGAGGTTTTGGATTCGTAAGATTTTCAAATAATATACTAGCTGCAAGGTCATTTACCAATGTGGTCAGTGTTGGTGGAACATTTGTAAAGATTAAACCTAGCAAAACAAATTCTGCTGAAGTTCACGTTAGTAATCTTAACCTACATGTCGATGAGGACGTACTCCGTCAAGGATTTGAAAATGCTTTAGGTCTTGACCGGAATGAGATAGAACGAGTTACAGTAATACGACACAAGGTAGCAAACACATCTGCTGACATGTTACAGACATTTCGACAACGCATCCGTAGAAAGATTGAAGAATATGTTAAAGAAGGCACTTACGAACTCGACCTTAGAAATCCGAAAGAAGCAGACTTTACATATTTGGCCTTTGTCATGTTTTCAAAACCGGAAGAAGGACTCGCTGCATGTGCAGGCATTGATCATAGTTTTGTAATGAACAATGAGGTTGTATCTATGAAAGCTGATTTGAAATCTTCAGTCATGATTCCAAAACTAATTTATGCAAAATACAAGCATGTCGTTACACCTTTGATAGATAGACTTTCTAAAACTGAACGAGCGACTATTCGACAAAAACAGCTGAAAAATGGAAACGTAGTCATTGATATACACACGGACAATATAGAAACCATGATAACGGTTAAAACTCACATTTTATCAACAATTAAAGGCCAAATAATGAGCGTAGAATCGACCGAAGATATCAGTTGGCTGTTTACATGGGATGGTAGAAGGCTAATAAAGACAGTCATGGAAAACACGGAAACAACAATCGTAACAGATGAACGGATTCTTTCCATATCTGTTCACGGCTCTGACAGAAATAAGGATAATGCTATAGAAATGCTTACAGATTATTTGAAAGAGTTGAAATCTGGAAAAACCAAAAAATTATCTTTGAGGGGATCAGACAAACCACCCGGTGTGATGAAGGAATTAATGTTACGATACGAATTTGACCTTAATAAACTCAAAATGGACACTGGTTTAAAATGTGTAGAACTTGATCATCGTTTTCACGTTGTCACTATTATTGGTGATTCAAAGACTGTCGAACAATGTACTTCTCTAGTTGAAAAGGTAATTGAAGATGTGTGTAAGAAACGCGAAATGCATAGTTTAGAACCCGCTAAAGAACGAGATTGTGGAATATGTTTCTGTCCAATAGAAGAAGACGAAATACGCCGACTTGAAAGTTGTGGCCACTCGTATTGTAAGGAATGTGTGGAGCTTCAGTTTAAATCTGCTGTGAAAAACAACAGTTTCCCCATCCTCTGTAGTATGGAGGAATGTGCTGAACCATGGGCTTGGAAAGATATTTCTAATTTAGCTGTAAAAACTGGAATCCCTGTCGCCGTATTGGATTTTGCCATGGGATCAGGACATACTAAAATTCGTCCAGTTAATAATAATGCGGTAAATTTCATGGATGAGTACACACAGAGACAAATGGAAGGTAGATTATTTAACGCTATTAGCCAAAAGAAGTTTAGACTAGCTAGAATACTAGTTGATGGTGGGATTAACGTTAATTGTTCGTTAAGAACGGGAATAACTCCATTGATGGTTGCGTGTGATCAACAAGTAGACGAGGAATGGGAAAGAATGCAAAGACATCTGATACGAATATTATTAGTGAATAATGCAGATGTTAACGCTAAAGACAATCTCGGGAGAACATGTCGGATGTATGCTACACTTACTGGAGATGTCCAGGTCATCCGGTTGCTGGAAGTACACGGATCGTCTGCTTTTGAAAATGACACAGTTTTTACATCTCGTGTTCGTCGTAACAGTGTTGTGATATCATCTAACCTTGTTAAAAACAGTCTTGATGATGCCATGAAAAATTATTTGTCCACTCTTGAAACAAAAGTCAAAAGTCAAGATGAAAAAATAAATAAATTAAAAAAATCAAATGAAGAGCTTAGTGACACTAACAGAATGATGAACAGTAAAATAGATTCATCAGAAAAAGATTTAGAATCTCTTCAACAATATGGGAGAAGAAACTCTCTTCGCTTCCATAATGTACCCACGAACCATGATAATATACAAGACACTGATGGATGTGAAAGATGGATAATTACGCAATCAAAATTGAAGTATGAAAATGCCTGCGAATATTCTTCCTTATCTGTCAATTCTCTCTACTATACGATGCAATCTGATACCTTATCATGGTACACAGAATTATTACTTTCAACCATACAACAACGGAAAATTGAAAGGATATACCTTACAATGCTGCCCGGCTGGGAAAGTGTTCTACCAACGTTACTGTCGATGTTTACCTCCCTGGAAAGATTTAATGTTGTATTTGAGTTGACAATCTGA

Transcript

Bpl_scaf_21273-0.0

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF07717	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR011709	Domain	DEAD-box helicase, OB fold	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_21273-0.0 global RNA-seq network