Gene detail

Detailed information of Bpl_scaf_21298-1.19 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_21298-1.19	KRAB AND ZINC FINGER DOMAIN-CONTAINING	Bpl_scaf_21298	90893	110722	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_21298-1.19

ATGGCCCTCGACTCTAATGCTATGCTTGGTGATAATGATGCTACACCCGAGATATTTATATTATTACGGGATCAAGCTTTCTTTAAACTCCAGTTCTTCGCAGGTGACAGAGCCTCCGATCTTGCAAAATGTCTAGCTCAAGAAATACGACGCTTACCTGACGATTCCGGATTTGTTATTACACATACGGTCGGTAAGACACTGAGTAACGGCAAGAAAAATGAATTTTCGATAATGCGAATTGATAACCATTCCATATGTCCAGTTTTCGGAATAGAAAAGTATATATCCGGTGCCGCAAAAATGGGCGTAAATTTGAAATTGGGGTATTTATTTCGGATTGTGAACCGTTCTAGGAATTGTATTTTGGAAATTCCGGCGAGTTACTCCGTTATGTATGGTCGTTTGAAGTCATATTTACAAGAGTTAGGGATAGATGAGGGTGAGACGCCTCATAGCATAAGGGGAGGGTGTGCGGTCACTCTGTCAGTCTCTGGTTTTGGTAACGCTCATGATATAATGGATCACATAGCTGACACAGCCAATATATTGACACTACCAGCTAACACTGCCAATATATTGATACTATCAGCTGACACAGTACATATATTGATACCGCCAGCTAACACTGCCAATATATTGATACTACCAGCTGACATAGCCAATATATTGATACTACCAGCTGACACAGTACATATATTGATACTACCAGCTGACACAGCCAATGTATTGATACTACCAGCTGACACAGCCAATATACACTTCCAGCCTGATGGTGAAAGCAGCAGAACATCCCTTGGCAGCACCATTGGCAATTTTGACTTGTCACTAGCTTCAGCGCCAACATATGAGACAGACAGCAGTGACGAAGCTGATACAAGAGGCTTATTCGTTCGTGCCAGACCATCATTTCCTAGTAACTCAGACTCATACAGCAGTGAATTTGACCCTGCCTGCCTACCAAGTGACCAGTCGTTCGACATAACTAGTCGATCATTTGATGAACCAGAGGTTGTCTACATGAAGAGTGACAGAGTCCATAAATTCGTCAGACAGCCTTACTTACCAAATGAGCACATCAGGTCATCTTTTAACAGACTGCACCTCACTGTTCCTGTTTCAGCCAGACCCCTACGTAGGATTATGAGCTACATCAAGTCCACCTGGATCACAAGTTCTAAGTTCCCAGTCAATACCTGGTCTGTGTTTGGTCAACCTGTAAGGACTAACAATGATGTCGAAAGGTGGAACCAGCTCCTCGACAAAAATGCAAAGGGACAAAGCCTTCAGCTGTATGTGATGACCAAACATCTAAGTGATGAGGCCAGATGTGTTCCTATGCAGGTCCAGTTGGTTTCAGATCAGAAACTCTCCAGCACACAAAGAGCATCTTCACGATGCACACATGTAAAGGTGTTTGAGTTGTGGGATCACGACAGCAATGGTGAAATCAGTCCATCTCAACATTTGAAGACTGAAGATGCAATGGCTGAAAACGTGAATAGTGAACAAGACGAATTGGAGCCCATAGATGCAATGGAAGGATCCTTTCTTGATGTTTCTAGAACAGAAGACTTTGAGACCTGTATTCAACGACAAAACCGCTGCTTTACATGTGATCATTGCCACAAATCCTTCCGAAAAAAGTACAATTTAAATAGACATGTCCTAACACATACCAATGATATCAAGTACACATGTGTGTCGTGTAATCAGTATTTCCAGACAGAGGAAAAGAGAGAGGTACATATGTCAAAGAAGCATTATGACCAAGCTACCTTGTGTGATATTTGTGGCTCCCGTATCGGCAGAAAAAGTGATCTCAAGGTTCATTTAAAGAAACATACAGAAGATCCTTCAAATAATATTTGTCCATTTGAAGGATGTCGCAGATCTTTCAGTAGAGATGCTCAATACCAAGACCACCTAAATACGCACAACGGTGCAAAACCGTACAAGTTTTCAAACTGTGTTGCCACATTTTCATGCCGCTACAGAAATCGTCTGCATGAAAATGTGTGCATGAAACGTGTAGAATACACCTGTGAGACTTGCAGCCTTCATTACCAAAGTGCTGACAGTTTGAAAGAGCACCAAGAAGCACATCACAATGAACAGATTTTCAAATGTCCTTGTGGTTCAATTTATAGGTATCGTAGTGGACTAAGCCGCCATAAAAGGGACCACCAGCATTGA

Transcript

Bpl_scaf_21298-1.19

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24379	KRAB AND ZINC FINGER DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_21298-1.19 global RNA-seq network