Gene detail

Detailed information of Bpl_scaf_41703-1.18 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_41703-1.18	SH2-SH3 ADAPTOR PROTEIN-RELATED	Bpl_scaf_41703	169395	176116	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_41703-1.18

GAATGACTGGAAAGGCAAAATACACCTTCTATTAATTTATACTTTATTGTTGTTTATTTCAGTAATGTAAACCACAGCAGCCGGATGCCAGCAGCAACAATGAATGAAGAAAATCAGCAGGTTGTAATAGCTAAATATGACTACAAGGCTGAAAATGCACAAGAACTAGATATCAAGAAAAACGAAAGACTAGTTTTGTTGGATGACACAAGGGAATGGTGGAAGGTACAAAATAGTCGTAACAAGTCGGGATTTGTTCCGTCAAATTATGTGAAACGATCAAAACCTTCAAAACTTTTGTCAGCACTCAGAGTAACACTTGGGAGGAAGAGTAAAAATGATGCCAAATTCACTAGCAATACTCCAGTATTGAGTCGTAATGGCGACACAGGAAGTGATCAAAATAGTACAAGTAGTGATGTTCAGATATGTGATCCTCAGCCCGCCATAGTCAAATTTAATTACGTACTTCAGAGGCCTGACGAAATGTCACTGACAAAAGGTGAACAAGTGACTGTACTTGAAAAATCTATTGATGGTTGGTGGAAGGGGCGCAGGCAAGATAACAATATGGGATGGTTTCCTTCAAATTATGTAGAAATAATTGAACAAAATGAAAACGATGCTCCTGAATATTCAACAGCGGCCATGTTGGAACCTCGAATTAATGAGCAAGAAAATGTTGTAGCTCTTTATGCATTTACTGGTTCAACACTAGAAGAACTGTCATTTGAAAAAGGTGACCGACTTGTGATTATTAACAAACCTGGCGATGTTCCAGATTGGTGGCGAGCTCAAAATGAATGTGGTCAGATTGGGCTGGTCCCTCAAAATTATGTTCAGGTTATAGATGACTGTGAAACAGCCAATAGCAATAGTTCTTCAACCCCACAGTCCCAATCGACAAGTAGTCTATCAAACACTTCTAATCTCTCAGTGGTTGGACCAGGAAGTAGAAAGCAATTTCGTATTTCTGGTCCACTTGCAGAAAAAGACTGGTATTATGGCAAAATAACACGCCAAGAATGTGAAGATCTTCTCAAAAAGTTTGCACAGGAAGGAGATTTCATTATACGTGATAGCGAATCTGCTAGTGGCAATTTTACAGTTGTTTTAAAAGCTGCAGAGAGAAATAAACATTTTCGTGTCAATGTGAATGAAGAACAATTTCAAATTGGTCAACAAAAATTCTCCTCATTAGACCAACTGATTGACCATTACAAGAGGCATCCTATCTTTAGACAGGAAAATGAAAAACTATATTTAGTCAAACCTTTTGTCATGCCATCAGAATTCTAATGCGACAGTCAAAGAAATATATTGTATTGCATTCAAGTTGTCAAAAGTGCAAAAATTAATTGTTTAAGTAGAACCTGTGTTGATTTTATGTACCACATGCCTCTTCAAGCAATTCAACCTCAGTACAAAGGCATAGATCTTTATGAATGGCTTATCCATTTATTTCATGATGCAGCTCAATTTAACAATATCCAAATTATTGTTCATTGCAATATTTACTTGTAATTTGTAATGAACACATAAAACCTTTGATCCCTGTTCTAATCTTAGGTAATATAGTCCAGACATATAAATGCGTCAATCCATTCAGACATTATCATGTATTATGGGAAATGTCTACAAGCGTGTGTTTGTATGAAGTGATATATTCCCCTTTAGGAGCTATGGGGGATTATTTATATTTCTAGCTACTGACCATGTGTATGGAACCACTTTATTACCATATATGGTCAATACTCATTACAATTAAATGCATTTAAGAATTAAAGTGGTATAAATGAGTACCCTCTAAATATGAAATTGAGACAGTCACAAAGTGAAGTTATTTGAGGAACCGTAGTTCTTGCTAATGGTTAGAAAAAATAAAGACCATAAGAGCTACCATTCCACATCTAAAACTGAGGTAGTACAGTATACAGGGCTTTCAATATTTTGTACATGTACTTCACTATTTACAAGCAGTACTTGTCATTAAAATTTGAACAATTTTCATGAATATTTTGTACAACACTCTTTTCAATCAGAAGGTACCAAAGACCATTTTAGGCAGGTAAAAGTACCTGTTACCACCTCTTATTTAAAGGCCT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017	SH2	SH2 domain	Domain	Interproscan
PF00018	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000980	Domain	SH2 domain	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR051184	Family	Tyrosine-phosphorylated adapter molecule	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19969	SH2-SH3 ADAPTOR PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0016477	Biological Process	cell migration	Interproscan
GO:0030971	Molecular Function	receptor tyrosine kinase binding	Interproscan
GO:0035591	Molecular Function	signaling adaptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19862	NCK2, GRB4; NCK adaptor protein 2	-	ErbB signaling pathway	ko04012	PMID: 28812709
			T cell receptor signaling pathway	ko04660	PMID: 28812709
			Axon guidance	ko04360	PMID: 28812709
			Pathogenic Escherichia coli infection	ko05130	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_41703-1.18 global RNA-seq network