Gene detail

Detailed information of Bpl_scaf_42542-4.6 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_42542-4.6	HELICASE WITH DEATH DOMAIN-RELATED	Bpl_scaf_42542	341855	366901	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_42542-4.6

ATGGCGGATACCAGGTCGGGATCAAATAGGACCCATTATGCCCGTCTTAGCCACGCCTCTCTTATTGTTATGCCTAAAATGCTACAGGAACTGTTAATGTTTTATGAACCACCAGAACTTCTCCTACGAGATTGCACCAGGTTATATCGATACCTGAACAGTACAGAAAAGGATCATGTTAACAACGCAAAACAGAATGGATATGGCAATTTCGATATTCCTCTAATTTACAAACTTCTACGAAATCTAAATCTGAAGCCATCCTTTCCAGAGCCAAGCAAAGGCTGGGAATCGTCAATAGATCCAAACTCATCAGAAGTAAGGGAAGGCGATGACCTCGAGAGATGTAGAAGATCTCGGAACGCTATCATCCATAAAGGAAATCCTTATGTTGGAAATGAAGAATTTTTTAAGTATTTCAAGTCTTTTAAAAATATAGCAAGAAGATTAGAAAAGAAATTGAAGAAAAGAAACAAGGAATTTTTATCGGAACTAGAGTTCTTAGAAACGTGTTACACAGTTCGGGTCCTTTCAACACCTACTGAAGAAGGAGTGGAATTCATCTCTACTAATACTACACAGAAATGTGTTGAAGGGGAAAAGGTGACATTGGAGTGTTTGGCCACTGGTGGAAATGTTAAACCTGTTTGGTTAAAGCAAAATGATCAAATGCCATCTGATGCTGTTATTGAATCGAAAAATCTATCCCTAAAAGTTACGTTTCCGAAAGTTACTCGACAACACGGAGGCATATACACCGTCAATATTGGTAATGAACAACGGGATGTGGAATTAAATGTTATAGAACGAGTGTCTTCTTTGACATTACGTAATTATCAACACGAGTTAGCAGAAGTTGCTTTGATGGGAGAAAACACTATTGTGTGTGCTGGAACAAATGCTGGTAAAACTCATGTTGCTTTCTATGTGATCGAAAACCATTTACTGAAAAATCCAGAGGGTAAAGTGTTGTTTATTAATGGAACAAACGTGTTATTAGAGCAGCAGTATCGGAAGGCATGTGAACTAATGACAGCACTTTATCAGCAGGACAAAATATATAAATGGGAAGCTGGAAAAGACTTCGACAAGAACTTTTTGGAAAAACTGCAAAGTACCAGTTTGTTGTTTTTGACACCCAAGTCGCTTAGCAACCACCTTGGAGAGAATGTAGATACCAAAGTGTGTATTGATGTGTTTACTCTGCTGGTATTTGACGAATGTCACCACACGTACAGTAAAGATTTGTATAATGAAATCATGAAGTATTATAGAATGGAGAAGTTTGAAAGAAGAACAGCAAAGCTACCGCAGATTCTAGGTTTGACTGCTTCTCCAGGCACAAATAAGTCCACTAATGAAGAATCAGCCATTGTTCATCTTAAAGCATTAATGGCAAACCTTAGTGTTTCAAAGCTGTCAGTTGTCAGAAAATATGAAGAGGAGATTAAGCAGTATTCAGCAACGCCTTATAAAGTTTCAATCCAATCAAAAACACGAGAAGATGATCCTGTGAAGAAAATTTTACTGAATGCTATAGAATATGTGGAGAATACACTTCATGATAGGAAAGTCAAAGATTTTTTAACCATCAATCATGATAGTACCAGAATTCTTGAAGAAGCTCTAAAAAAAACACCCACAGATAAAACTGATTCTAGATATATTCAATGGATGGCTGAAACCAAAGTCAAAATTGAAAAAGTTCTTCACAAAGATAAGGAAGTGCCACGACTTTTGCATGCGTGTATCAGACATTTAGAGCTTTATGCAGACTGTCTTGAAGTTAATTCTCTTCTAGAAATAGACCAAGTAAGAGAAGTTCTATCAGCTGGGTATGGGCTGTTGTTGTACGAAGGACAGACTGCTAATACTGCTGCAGAAGAAAACGTTGTGTCAAAGTTGAAAGAGGTATACACAGACATTTTCAAACTGGGCAGGAATTTAGAAGCGAACCCTGATATCAATGAAATTTTCAAAGCTATGGAACAAGAATATGCTAAAATGAAAGAAGAATCAAGATTCCTTATATTTGTTAAAACCCGAGCAACAGCCAAGGCTCTAGCGGAGAGGCTGCCAGACTACCTCCAAAGTACACATTTGACTGGATCACATGCTTCAAAGACTGAAGGAGGGATTTCAATAAATGAACAACTAGATGTTGTAAAACGATTTAAAGAAGGAACACATTTATGTATTGTTGCTACGTCAGTTGGATGTGAAGGATTAGATATTCAACAATGTAACATGATGATTCGTTACAGATTTCACGCTGATGAGATCAGTAGTTTGCAGATGCGAGGTAGAATCCGTCAACTAGAAGGTAAAGAAGTATTATTAGCTACCGACATAGACCTTGCACGAGAGATTCAGAATATAGAAAGACAATGCTTAATGAAACAGGCCATCGAAAGCGTTACAGAACAGGACCTAATCAGGCAAATAACATTGGCTGAAAGATGTGTATATGACACAGAAGAAGCTGAAAGAAAAATGAAGAAAATGAAGATCAGCAAGAAGAAAAGGGGGGAGTTTACGATTAAATGTAAATGTTGTGGCTTATTAATTATTAAGGGTGATTTGGTGAGGCACATTAAAAATAAGCATTACATAATATGCTGCAAAGACATATTAGAACGAATAACTCGAAAAACAACAGAAAGGAAAGAGAAGAAGTTTGATGGCGTTCAAAAGCAAGACAAAGTTTACGGAGAATGTCAGCATAACTGGGGATCGATTCTGATTTTTCGCAAGCTTGAATTTGTGTCTTTGTCTCAAGATTACATTAAATTTTTTGATGTAAAAAAAGATGAATTTTTGGATTGTAAAAAGTGGTCGGACTTGACATTCATGATAAACGAAATATCTGAAAACGACATAACAGAGTATGATGATACTGTGATAAGCTCACAAGACATAAATATTTAA

Transcript

Bpl_scaf_42542-4.6

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF11648	RIG-I_C-RD	C-terminal domain of RIG-I	Domain	Interproscan
PF18119	RIG-I_C	RIG-I receptor C-terminal domain	Domain	Interproscan
PF18738	HEPN_DZIP3	DZIP3/ hRUL138-like HEPN	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR021673	Domain	RIG-I-like receptor, C-terminal regulatory domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR038557	Homologous_superfamily	RIG-I-like receptor, C-terminal domain superfamily	Interproscan
IPR041204	Domain	RIG-I-like receptor, C-terminal	Interproscan
IPR041249	Domain	DZIP3-like HEPN domain	Interproscan
IPR051363	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12646	DDX58, RIG-I; ATP-dependent RNA helicase DDX58	EC:3.6.3.14	NF-kappa B signaling pathway	ko04064	PMID: 28812709
			RIG-I-like receptor signaling pathway	ko04622	PMID: 28812709
			Cytosolic DNA-sensing pathway	ko04623	PMID: 28812709
			Measles	ko05162	PMID: 28812709
			Influenza A	ko05164	PMID: 28812709
			Hepatitis B	ko05161	PMID: 28812709
			Hepatitis C	ko05160	PMID: 28812709
			Herpes simplex infection	ko05168	PMID: 28812709
			Epstein-Barr virus infection	ko05169	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_42542-4.6 global RNA-seq network