| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_48198-2.7 | RETINOBLASTOMA-BINDING PROTEIN 6 | Bpl_scaf_48198 | 265105 | 288568 | + |
| CDS | |||||
| Bpl_scaf_48198-2.7 | |||||
| Transcript |
| Bpl_scaf_48198-2.7 |
| Protein |
| Bpl_scaf_48198-2.7 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity RING|U-box |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001841 | Domain | Zinc finger, RING-type | Interproscan |
| IPR001878 | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR036875 | Homologous_superfamily | Zinc finger, CCHC-type superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15439 | RETINOBLASTOMA-BINDING PROTEIN 6 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0016567 | Biological Process | protein ubiquitination | Interproscan |
| GO:0061630 | Molecular Function | ubiquitin protein ligase activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K10624 | RBBP6; E3 ubiquitin-protein ligase RBBP6 | EC:2.3.2.27 | Ubiquitin system | ko04121 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_48198-2.7 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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