| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_48231-3.7 | SIN3B-RELATED | Bpl_scaf_48231 | 222561 | 348438 | + |
| CDS | |||||
| Bpl_scaf_48231-3.7 | |||||
| Transcript |
| Bpl_scaf_48231-3.7 |
| Protein |
| Bpl_scaf_48231-3.7 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | DUB|USP|USP |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00397 | WW | WW domain | Domain | Interproscan |
| PF00443 | UCH | Ubiquitin carboxyl-terminal hydrolase | Family | Interproscan |
| PF00581 | Rhodanese | Rhodanese-like domain | Domain | Interproscan |
| PF02671 | PAH | Paired amphipathic helix repeat | Repeat | Interproscan |
| PF08295 | Sin3_corepress | Sin3 family co-repressor | Domain | Interproscan |
| PF08969 | USP8_dimer | USP8 dimerisation domain | Domain | Interproscan |
| PF16879 | Sin3a_C | C-terminal domain of Sin3a protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001202 | Domain | WW domain | Interproscan |
| IPR001394 | Domain | Peptidase C19, ubiquitin carboxyl-terminal hydrolase | Interproscan |
| IPR001763 | Domain | Rhodanese-like domain | Interproscan |
| IPR003822 | Repeat | Paired amphipathic helix | Interproscan |
| IPR013194 | Domain | Histone deacetylase interacting domain | Interproscan |
| IPR015063 | Domain | USP8 dimerisation domain | Interproscan |
| IPR018200 | Conserved_site | Ubiquitin specific protease, conserved site | Interproscan |
| IPR031693 | Domain | Sin3, C-terminal | Interproscan |
| IPR036020 | Homologous_superfamily | WW domain superfamily | Interproscan |
| IPR036600 | Homologous_superfamily | Paired amphipathic helix superfamily | Interproscan |
| IPR036873 | Homologous_superfamily | Rhodanese-like domain superfamily | Interproscan |
| IPR038765 | Homologous_superfamily | Papain-like cysteine peptidase superfamily | Interproscan |
| IPR039774 | Family | Transcriptional regulatory protein Sin3-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12346 | SIN3B-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000118 | Cellular Component | histone deacetylase complex | Interproscan |
| GO:0000122 | Biological Process | negative regulation of transcription by RNA polymerase II | Interproscan |
| GO:0000785 | Cellular Component | chromatin | Interproscan |
| GO:0003714 | Molecular Function | transcription corepressor activity | Interproscan |
| GO:0004843 | Molecular Function | cysteine-type deubiquitinase activity | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0006355 | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0016579 | Biological Process | protein deubiquitination | Interproscan |
| GO:0016580 | Cellular Component | obsolete Sin3 complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K11644 | SIN3A; paired amphipathic helix protein Sin3a | - | Mitophagy - yeast | ko04139 | PMID: 28812709 |
| Thyroid hormone signaling pathway | ko04919 | PMID: 28812709 | |||
| Transcriptional misregulation in cancers | ko05202 | PMID: 28812709 | |||
| Huntington's disease | ko05016 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_48231-3.7 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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