Gene detail

Detailed information of Bpl_scaf_48232-6.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_48232-6.8	GLYCOSYLTRANSFERASE-RELATED	Bpl_scaf_48232	640943	668136	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_48232-6.8

ATGCTGATAAGGATGAAACAGAGGACTCTGGTCTTGTTACTTATCATAGGAGCATTTCCAACATGTCTGCTTGTCTACTTAGCATTAACTACAGATGAGATACCAAACTATGATGGCCGTTCAGGGCAAAATTTGGAGTCCAGATTTACACAGAGACTGAGAGAAGTGGACCAAGAAAACAGAGTCCTCAGAAAACAGCTAAGCAAAGCAAGGAACAAGCTGTTAGGATTACAAATGAGTATAGCTGTACAGAATGATACTAATGATGGTAATAATAAAACACATATTAGATGTCTAAATGCTGAACCAGAAATACCAAAGTGTGAGGTCATACATGTTGCTATTGTATGTGCTGGACACAGTGCAACGAGAAGTGTAGTCACACTGATTAAAAGTGTCCTGTTCTACAGGAAGAACCCACTTCATTTCCACTTTATATCTGATCCTATAGCTGAACTGATTCTACGTCATCTATTTGAAACCTGGAACGTACCAGAAGTTAGTGTCAGCTTTTATTCAACAGACAAAATCCAGGAAGATGTTGTGTGGATATCAAATAAACATTACTCTGGAGTTTTTGGACTGATGAAATTGACATTACCGAAGACGTTACCACAGAACTTGACAAAGGTGATAGTCCTCGATACAGATGTTACTTTCGCTACAGATATTGCTGAACTATGGAAAATCTTCAGTATATTAAAAAGGAAGAAGGCTATTGGATTAGTAGAAAACCAAAGTGATTGGTATCTTGGTAAACTCTGGAAGAATCATCGTCCCTGGAGAGCTATTGGTAGAGGTTTAAATACTGGAGTTATCTTACTTGATTTGCAAAAGCTACGTGACATGCAATGGATGGCTTTGTGGAAGAAAATAGCTGAAGAAGAATTACAGACTATGTTGTATACTTCTCTAGCTGACCAGGATATTTTTAATACAGTGTTGAAATTACATCCATATTTATTATATCAGTTGCCATGCCAATGGAATGTACAACTAAGTGATAACACTCGCAGTGAACAGTGTTACAGTGAAATTTCTGATCTGAAGATTATCCACTGGAATTCTCCAAAGAAGTTGAAAGTGAAGAATAAACATTTAGAGTTTTTCCGTAATCTGTACCTTACATTTTTGGAGTATGATGCGAATCTTCTGAGACGGGAATTATTTGGATGTGAAGTTAATCAAGAAAACTCTATAGAACAACAGTTAAATGCATTGAACGAAGAGGACGAATGTTACGACTTTCGTCGAGAGAGAGTTCTTATTCACCGAACACACTTATTTTACCTTGACTACAGTTATGAACCAACCGAATGGGACGTAACTTTAGTGGCACAGTTAAGTATGGACAGACTACAGATGTTAGAGACCATCTGTAAACACTGGGAAGGACCTATCAGTCTGGCTCTACATATGTCAGATGCCGAAGCACAACAGTTTTTAGGATATGCCCAAGGATCAGATATATTAATGAAGAGGAAGAATATTGGTTACCATGTAGTTTATAGAGATGGGCAATATTACCCTGTAAATTACCTTAGAAATGTAGCATTAGGACAAGTGATGACTCCGTTCGTGTTCCTGTCAGATGTAGACTTTCTGCCGATGCATGGGTTGTATGAATACTTAAAGAAAGCTTTACCATTGATGGATATGGCTAATAGTAAAAAAGCTTTAATAGTACCAGCCTTTGAAACACAGAGATACAGGATAGACTTTCCTAAAACCAAAGCAGAACTTTTGTCACAGCTAGATATGGGAGATCTCTTTACATTTAGGTATCATGTCTGGCCTAAAGGACATGCTCAAACTAATTATGCTAAATGGAGAATTTCAACACAGCCTTATAAGGTTGACTGGAACCATGATTTTGAGCCTTATATAGTAGTGAGTAAAGACATTCCAAAGTTTGACCAAAGATTTGTAGGGTTTGGATGGAACAAAGTATCACATATAATGGAGTTAGATGTTTTAGGGTACCAGTATTATGTTCTACCAAATGCCTTTATGATACATATGCCTCATGCTCCAAGTTTTGACATTGCTAAATTTAGGTCAAGCTCTATTTATAGAAGATGTCTAAAATTACTCAAGGCTGAATTTAAAAGAGATCTATCACTAAGACATGGACTAAAAGCTTTAAAATATTTGTCAAATGATTGA

Transcript

Bpl_scaf_48232-6.8

TTATTTCAGGTACTGCCATTGAATCCTGTATGGAAAGTAGAAGCACAAAACATGCCTTATCAGAATGCTGATAAGGATGAAACAGAGGACTCTGGTCTTGTTACTTATCATAGGAGCATTTCCAACATGTCTGCTTGTCTACTTAGCATTAACTACAGATGAGATACCAAACTATGATGGCCGTTCAGGGCAAAATTTGGAGTCCAGATTTACACAGAGACTGAGAGAAGTGGACCAAGAAAACAGAGTCCTCAGAAAACAGCTAAGCAAAGCAAGGAACAAGCTGTTAGGATTACAAATGAGTATAGCTGTACAGAATGATACTAATGATGGTAATAATAAAACACATATTAGATGTCTAAATGCTGAACCAGAAATACCAAAGTGTGAGGTCATACATGTTGCTATTGTATGTGCTGGACACAGTGCAACGAGAAGTGTAGTCACACTGATTAAAAGTGTCCTGTTCTACAGGAAGAACCCACTTCATTTCCACTTTATATCTGATCCTATAGCTGAACTGATTCTACGTCATCTATTTGAAACCTGGAACGTACCAGAAGTTAGTGTCAGCTTTTATTCAACAGACAAAATCCAGGAAGATGTTGTGTGGATATCAAATAAACATTACTCTGGAGTTTTTGGACTGATGAAATTGACATTACCGAAGACGTTACCACAGAACTTGACAAAGGTGATAGTCCTCGATACAGATGTTACTTTCGCTACAGATATTGCTGAACTATGGAAAATCTTCAGTATATTAAAAAGGAAGAAGGCTATTGGATTAGTAGAAAACCAAAGTGATTGGTATCTTGGTAAACTCTGGAAGAATCATCGTCCCTGGAGAGCTATTGGTAGAGGTTTAAATACTGGAGTTATCTTACTTGATTTGCAAAAGCTACGTGACATGCAATGGATGGCTTTGTGGAAGAAAATAGCTGAAGAAGAATTACAGACTATGTTGTATACTTCTCTAGCTGACCAGGATATTTTTAATACAGTGTTGAAATTACATCCATATTTATTATATCAGTTGCCATGCCAATGGAATGTACAACTAAGTGATAACACTCGCAGTGAACAGTGTTACAGTGAAATTTCTGATCTGAAGATTATCCACTGGAATTCTCCAAAGAAGTTGAAAGTGAAGAATAAACATTTAGAGTTTTTCCGTAATCTGTACCTTACATTTTTGGAGTATGATGCGAATCTTCTGAGACGGGAATTATTTGGATGTGAAGTTAATCAAGAAAACTCTATAGAACAACAGTTAAATGCATTGAACGAAGAGGACGAATGTTACGACTTTCGTCGAGAGAGAGTTCTTATTCACCGAACACACTTATTTTACCTTGACTACAGTTATGAACCAACCGAATGGGACGTAACTTTAGTGGCACAGTTAAGTATGGACAGACTACAGATGTTAGAGACCATCTGTAAACACTGGGAAGGACCTATCAGTCTGGCTCTACATATGTCAGATGCCGAAGCACAACAGTTTTTAGGATATGCCCAAGGATCAGATATATTAATGAAGAGGAAGAATATTGGTTACCATGTAGTTTATAGAGATGGGCAATATTACCCTGTAAATTACCTTAGAAATGTAGCATTAGGACAAGTGATGACTCCGTTCGTGTTCCTGTCAGATGTAGACTTTCTGCCGATGCATGGGTTGTATGAATACTTAAAGAAAGCTTTACCATTGATGGATATGGCTAATAGTAAAAAAGCTTTAATAGTACCAGCCTTTGAAACACAGAGATACAGGATAGACTTTCCTAAAACCAAAGCAGAACTTTTGTCACAGCTAGATATGGGAGATCTCTTTACATTTAGGTATCATGTCTGGCCTAAAGGACATGCTCAAACTAATTATGCTAAATGGAGAATTTCAACACAGCCTTATAAGGTTGACTGGAACCATGATTTTGAGCCTTATATAGTAGTGAGTAAAGACATTCCAAAGTTTGACCAAAGATTTGTAGGGTTTGGATGGAACAAAGTATCACATATAATGGAGTTAGATGTTTTAGGGTACCAGTATTATGTTCTACCAAATGCCTTTATGATACATATGCCTCATGCTCCAAGTTTTGACATTGCTAAATTTAGGTCAAGCTCTATTTATAGAAGATGTCTAAAATTACTCAAGGCTGAATTTAAAAGAGATCTATCACTAAGACATGGACTAAAAGCTTTAAAATATTTGTCAAATGATTGAAAAAATACATGAACTGGCAAAAGTGCACAAAATGTGATTAGAAACAGATGGACAAAAGTGATACATATAGAATAACAGCAGTTTTAAAGGTTGAGAAAGATATTACCACTTGTATTACGTGGAGTCTGACCTTCAAAATGGGTGTTATCGTTTTTATTAGATCAGTCTGTTGAAACTGACAATATTACTCAATGAGATCAAAGGAAAAATTGATACAATATCGATAAATGGAGTTAATAGTCATACATGTGTATTTAGTGAATTAGTTTCGTTTTTCTGAAAAATCTATCTGTATTAGGTTAATAAAGGAGGAGAGATAAAACTGACTAGTTGAGAGAGTGATACTTCTAACAAACATATTTCAAAGGAGATAGCATTATAAGATGGAGTGAAACTTATAGTGGTCCATTCCAACTTTTTAGGATATGGTAATAATGGTTGGTGAATATACAAAGTAATTAAATGTTCGATGGAGGAATAAAAGTTGTTGACAAAGTATTTTGCATTGAAATAATTGTATTTTTTTTAACTTGGGATCTGAGTGATCATGAAGTATGGTATAAATTCATGAAGTAAAGTGCTACAACTCTCCACATGACTTGCCATATTGTTTAATATTATTGAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01501	Glyco_transf_8	Glycosyl transferase family 8	Family	Interproscan
PF13896	Glyco_transf_49	Glycosyl-transferase for dystroglycan	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002495	Family	Glycosyl transferase, family 8	Interproscan
IPR029044	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR051292	Family	Alpha-1,3-xylosyltransferase/Beta-1,3-glucuronyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12270	GLYCOSYLTRANSFERASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005794	Cellular Component	Golgi apparatus	Interproscan
GO:0015020	Molecular Function	glucuronosyltransferase activity	Interproscan
GO:0016757	Molecular Function	glycosyltransferase activity	Interproscan
GO:0035269	Biological Process	protein O-linked mannosylation	Interproscan
GO:0042285	Molecular Function	xylosyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09668	LARGE; glycosyltransferase-like protein LARGE	EC:2.4.2.- EC:2.4.1.-	Mannose type O-glycan biosyntheis	ko00515	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_48232-6.8 global RNA-seq network