Gene detail

Detailed information of Bpl_scaf_49546-3.17 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_49546-3.17	SORTING NEXIN-4	Bpl_scaf_49546	349875	366665	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_49546-3.17

ATGGCAGACACTGGCTATAGCTCAGGTTCAAAGGAAGAAGAAAACGATTCTCCTACGAAATCTGAAGAGAAAAGAGGATTCAAAGATCCTTTGATTAGTGGTTTAGATGTTAACGATGACGTTGATGTGTATGCTTCTGGAAAGTCTGATATCAGTGTTTCACGAAGTTCTAGTCTGATTGCAAATTTGAGTCATTTTGAAGATGTTGAAGATGACTCCCATGACTTATTTGTGCATGTTGATGATCCAGAGAAACACACAGGAACAATGGAGTCCTATGTTACATTTAGAGTGACAGCTAAAACAACTCGTAGTGAATATGATGACAGTGAATACTCTGTAAGGAGAAGATATAATGATTTCTTTTGGCTCAGACAGAAATTGGAAGAGACTTATCCAACACACCTTGTTCCTCCACTCCCTGAAAAGCACAGTTTGAGAAGATTAGATCGTTTTAGTCCAGAGTTTTTAAGAGTCAGACAAGCAGCTTTACAGAAATTTTTGAAGCGGATAGCAGACCATCCAGTCTTGTCCTTTGACAAAAATTTCCAGGTCTTTCTGACAGCAAAAGCTTGGGAATTTCAAGCTCATAAGAAACAAGGGACAGGGTTATTGGGTCGAGTGACAGATTCTTTACACAACATAAGTGCTTCATACATGATGAAAAACAGACCACCTGAGTTTATTATAATGTATGATTATATACATGCCTTATCAGAAAAACTTGGTGTAGTTGATAGAATATCTCAAAGAGTTTCCAAAGAACAAGGAGAATTTTTAATAGAATTGAGTGAATGGGGACCAATTTATACACTTTGGTCTAATTCAGAGGACGAACTTGTGCCATCACTACTCGCCATGTCAGAAACTGTTGATAAATGTTGTCAGTATCTTAGGGAAATGATTGATGCAAATGATGAAGATTTTTCCCAACCATTAAAAGAGTACATACTATTTACAGATGCAATAAAGGCTGTATTACGCAGAAGAGATGCTATACAAATGGAATTTGATGCAACAGTAGATGAACTGAATAAAAGAAAAGATGAAAGAGAACAGTTAAAGATCTCAGATCAGACATATTCAATTGGTGCATTCCTTGGCAAAGATCCAGAAGATGTGAAACAACAAAAACAGAACAAATTAGAACAAAATATTAATGAGTTAACAACTAAGATGGAAGAATTAAATGATAAGACAGTGTGTGCAGACACAGATCTCAGGGCAGATATGGAAAGATGGCATAAAAATAAACAAAAAGATCTCAAAGAATTATTTATATCTGTAGCTGATAGACAAATTAAATACTATGAAAAGGCATTGAAAGCATGGGAAGCTGCAATAAGAAAAATACAAGCAAAAGATATAGAATACATTACTACAGAAGTTCCTGAAGAACCTACACAGACAGATTCCTAGTCACCATGACAACTGTAATCTAATCATCTTCATGTTTCATATATATAATCAATAACAGTGATAGTCATTGTAATTGTGATTTTATAAATCATAAGCAGATAGTAATTGTGATCATGGTTCACTTATGTTAACAATAGCTGTGACAGTAAATGTAATCGCCATTCCCAATCATAAAATGTGAAAGTAATTATGATTCACAATCATGAAATGTGAAATTAATCATGATCCAAAATTATAAAATGTGAAAGTAATTATGATTCACAATTATAAATGTGAAAATAATCATGATTCACAATCATAAAATGTGAAATTAATCATGATTCAAAAATTTAAAATGTGAAAGTAAGGCCATGCAAAATTAATTACTTGGTTCTCGGGCCCTTTTTTGTCAAAATTGATGAGGGAGGGCAGCATTTTTTTTAATCCTTTTACTGCTGTAAAAAGTGATGAGGGAGGCATTTTTTCTTTTTTTTTGGTGAAAAATATGGCAATGTATAAATCTTTTCATTACTTTATTGAAGATTTCAATCTTATTTCTTCCGATGGTGGCAGAAACATCACAAGTGGTTAATTTTTATGGAAACGTCCAATCCGCTGGTCCCAACGTACCATTTTTTTTATCTCCGTAAACAATTCCAATAAGGTACAAGCTTCGGAGAAGCCCTCTATTATGTTCCCTGGTAAACTGGCAAACATTTGTGCCGAATTTGCACAGAAACGATTGACATTTTGTCTAAATGTCAAACGGAAACACGTTTTTTATTTATACATTGCCATAACGATGCTTTAAATCTCTTGATGCATGATGCGTTTTAAAGCGTTTCACCGACCACGCGATATAAGAGAAAAAACGGATGCGATTGTTTTTTTCCGTACGGACCGCTACCGCATTTAAATTTTTTTTTTTTACTATTTTTGCAATAAAATCGGCAATGCGGCGACGAATTTCCACATGCGGGTGGGCCTGAGAACCAAGAAATTAACTTTTTATGGCCTAATTATGATTTGCAATTGTAAAATGTGAAAATATATAATCATGATTTCTAAACTTTAACATTATTACATAATCACTTGATTGTAATCATGAGTCACATTATTACATAGTCACTTGATCGTTTTGATTTACAAATCATAGTTATTACGTGTCAGCAGCTAATCTTAATTTCTAAAACATGATCTATATAACTCATCCAATTACTGCCATTCTAGACCCATGTGATAAAATATAATAATCAGTGTGTGTGTGTGTGTGTGTGTATGTGTAAAGGTGTTAATCACTTTACATGATAATATTGTAACAGTGAACACAAGTATTATGTAATATGCTTTATGTTAATGGTTTCTCAATGAAATCCTTATGTGAGAATGATATATTTATCAGAAATGAGTACTCAACTACATATATATTCTTGCATAAGTAATTCTACCAGACATGGGTACTGACCTTGCTCCTTTTGTGAGATAGTTTACCAGACTGTATAGATATCATGTTTTCACATATGCTATGAAAATTCTTTACACAATTTATTTATAAAAAAAATAATGATTGAAAATTGTTATAACAAATTCTGGTAATTTCAAAGAAATAAGTTTCAACCATATCTGTTACATTTGTAGTAAAATTAGTGAATTATAATAACCCCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00787	PX	PX domain	Domain	Interproscan
PF09325	Vps5	Vps5 C terminal like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001683	Domain	Phox homology	Interproscan
IPR015404	Domain	Sorting nexin/Vps5-like, C-terminal	Interproscan
IPR027267	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR036871	Homologous_superfamily	PX domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45949	SORTING NEXIN-4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000407	Cellular Component	phagophore assembly site	Interproscan
GO:0000422	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005769	Cellular Component	early endosome	Interproscan
GO:0015031	Biological Process	protein transport	Interproscan
GO:0032456	Biological Process	endocytic recycling	Interproscan
GO:0034727	Biological Process	piecemeal microautophagy of the nucleus	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0061709	Biological Process	reticulophagy	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17921	SNX7_30; sorting nexin-7/30	-	Domain-containing proteins not elsewhere classified	ko04990	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_49546-3.17 global RNA-seq network