Gene detail

Detailed information of Bpl_scaf_50283-1.19 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_50283-1.19	APRATAXIN-RELATED	Bpl_scaf_50283	100637	115764	-

Gene Structure

More details in Jbrowse Sequence

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11969	DcpS_C	Scavenger mRNA decapping enzyme C-term binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011146	Domain	HIT-like domain	Interproscan
IPR019808	Conserved_site	Histidine triad, conserved site	Interproscan
IPR036265	Homologous_superfamily	HIT-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12486	APRATAXIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000012	Biological Process	single strand break repair	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0033699	Molecular Function	DNA 5'-adenosine monophosphate hydrolase activity	Interproscan
GO:1990165	Molecular Function	single-strand break-containing DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10863	APTX; aprataxin	EC:3.6.1.70 EC:3.6.1.71 EC:3.6.1.72	Base excision repair	ko03410	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_50283-1.19 global RNA-seq network

TOP

Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering
Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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