Gene detail

Detailed information of Bpl_scaf_59469-1.33 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_59469-1.33	HELICASE SRCAP-RELATED	Bpl_scaf_59469	196352	212822	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_59469-1.33

ATGTCAACAACAGTAAGAACAACATCTGTACAGTTACCAACAACATCAACAGTCATGGCTAGTCAGAAACCTGTCATGAGAGTTAGTCCACTTACAGCTGATTCACAAGTTTCGTCATCAATAATAAATGTAACTGACTCATCAGGGATAAAGATGTCCACTGGGCCAGTTCCCACTAAACCTGTGAAGAAAAAACAAAAGAAAGATGTCAAGAAAACAGAATTTTATTGTAATACCTTAGAAGAAAAGAAGATGAGAGAACGTGAACAGAAGTTGGATTATATTGCTAGAATGAATGAAAAACATTGTTCCCGTGTGCCTGTGTATGGACAAGATTTATGTCACACCGTAGATGTGTTCCGAGACATGAATAAAACATGTGTTAAAGACAATACCTGGAAAGGATTGGGCATGGTGTATTGTCATAATGTTCATAATTCTTCTTCTAATATAAATCCATCCAGTTTTCACTGGAAACAAACCAAAGTGCTTTCAGATCTTGTAAATACTCCAGAACAGTTTCTTAAAAAAATGGAGGACATTGTGCTAAGGTATGCATTCGTCACACCACCGGTTACTGCTCCAAGAATTCGTATGCATGTGTCGCATCCTCCTCCACATCATCTGGTAGATGAGAGGAGGAGGATAATGATGCTACAGTCTGAACTGTCTCCAAAGTCTACTTGTCTTCATCCAATATCAACAAGACTTGCTGTACAGTTTCCAGAGAAACGCTTGATTCAGTATGATTGTGGTAAACTTCAAGTATTAGATATTTTATTACAAAGACTTAAAACAGAAGGACATAGGGTACTTATCTTTACCCAGATGACAAAAATGTTGAACATTTTAGAATCATTCCTTAATTATCACGGTCATCGATATCTCCGTCTGGACGGAACAACCAAAGTAGAACAACGTCAGTTTTTGATGGACAGATTTAATGCAGATAAAAGGATATTTGTGTTTATTTTATCAACACGGTCAGGTGGTATAGGTGTAAACTTGACCGGAGCTGATACAGTGATATTTTACGATAGTGATTGGAATCCTACCATGGATGCTCAGGCTCAGGATCGATGTCATAGGATTGGTCAGACTAGGGATGTTCACATTTACAGACTTATCAGTGAAAGAACAGTAGAAGAGAACATTCTAAAGAAGGCTAATCAAAAGAGGATGCTGGGAGATATGGCCATCGAAGGTGGAAACTTCACTACTACATTCTTTAAAGAGCAAACAATCAAAGATTTGTTCTCAGAACCATCGGGTTTAGACTCGTTGGTGAAAGAGAAACAAGAAAAGGAGGAAACACCTCCACCAGAAGCTAGTGATCTGAAAATGAAATCCTTACAAGAGGTAGCTGGAGATGAGGGAGATGATGAAAAACCAGTAGGAGACACAAGTGTTATCAACCAGTTTGAAAAGGCTTTGGCCAAAACAGAAGATGAAACAGATGTAGTAGCTGTAGAGCAAGTTAAAGCAGAACAAAAAGCTGAATTAGCCGAATTTGATGAAAACATTCCATGGGATGAAAGAGAGGCTGAGAGAAAAAAGGAAGAAGATGAATCTAAAGTAGAGATGGAATTAGCTATGCTAGAAAAAGAGCTGACACCTGTAGAGAGATATGCTGTTAATTATATGGAAGAAGAAATGGATCCTTTAGCTGAAGAACTACAAATTGCAGAGTGGGAACTTGGTAGATTAAAGGCTTTGAAAGAAGAGGAAGAACGACGACTAGAGGTTGAGGAAGATGAAATGCTTTTCACATATACCAGGGAGGATGCTTTTAACCAGGTGAAGAAATCAGTCAAGAAATCCAAATCTGTTGGGGCCAAGGCAAAAGCACCTTCTCGTACCCCATCAGGACGCAAGAAGCCTGTTAAGAAAAAGGATGAGAACTTCGTCATTGATGAAGATAAAAGGAGGTCGGATCAGAGTCTTTCTGATCATGATTTTGAAAAAACACCAAAGTTAGTTAGGCCTGTTGGTAGACCTGCCAAAAATAAAACCCCCAAACCAACACCAAAAGCTACTGCTAAAGGTAGAAGGTCTAGCAAAATAGATGTAGAAACAGTAGAAGAAGTTCAGAATGAAACCCCAAAACAAAATAAATCAAAAAGACGTCAATCAAAGGGATCACCTAAAGCTTCTACAGATGAAAAAGCCAATGCTTCAAAACTTGTCTCTAAGATACTCGCAGCACAAGCCAATCAGAAAGCAGCAATTTCTTCCCCACAATCAAGTTTAACTGCCATACAACAACAGCAACAAACCACATATTCACAGCAACTTCTGGCTCAGAGTCAAAAGGCTGCGTTATCAAAGGCACAATTGGCCTCAGCCATACAGAAAATACAATCTCCAAACCTATCAAAACCCACACTACAACCACAACTTCTTTCAGCTTCTCAGTTACAACATCTCAAACAGATAATCTCAAATGCTCACCGCAATATTACACCAGGACAACCCAATACTGGTGCACTCCCTCAACAGACACTACAACCAGGACAAACCTACATACCACAATCTCCAGTAAAATCTGCTACATTACAAAATGCAGCTGCACCGGTTCAACAATTGTTTTTCCAACATTCACCTTCTCAGCAAGGTCAGTTCGTAATCTCACAAGGTCAAAATATGGTACCGCAAATAATCACACAACAACAAATATCACAGATGCAGCAAATTCAAGGTACACAAACTGTAGTTACTCCTTCGTTTGTTCAGGTTCAAGGTCGAGGAGGGGTTACTCCTACTCTTCTGCAGATTCAAGGTTCACAGCCTGGTGCTCCTCCTTCATTGGTTCAAATACAACAGCCACAAAACATTCCTGCATTTTTACAAATTCAAGGTTCACAATTGCAATCTGGTTCAACTCCTTTGATTCAGGTTCAAGGTTCACAGCAGGCTTCAAGACAAGTTCAAGTTCAGGGAACAAAAACAACTGTACCAACTACACAAGTTCTCCACTTTCAAACTTCACCATCAGCTCTTCTTGCTCAGATTCAAGCCTCACGAGTTCATGGTAGTTCGCAACCACAGGTTCAGGCTTCAAGAATGCAGTGTTCCCATTCAGTTTTAAGTGCTACACAGAGGGCTCATCCAACCATTGTTCAAGCAACTCAGGGGACACAGTTGGTGATTCCACCATCTAACATGTCCTTGGCAAAGCAGTCAGCGGTAAAGAGTTCTCAGTTTCCTGGTTATGTACCTACCACTCAGACATCAGCCATCACCCAAGTTAAAGTTTCAAGTATTACAACTCCTTCAATAATCAATGTACAAAACATGCCACAACAAACCGCTAAATTAACCACAAATAAAATAGCACCTACACAATATGCTACAGTCCAGGACATTCAGTTAGTCGTGTCAAACGCTTCTAACATTCCAAAAGTTGTTGGGTCCCAGATCGTGACGAAAGCTTCACCAGCTATTCAGCAGACAAGACCTACAACACCACAACCAAGCATTCAAGTTGTTAAATCTCAAGTATCTCTGTCAGGTGGATCTTTACAACAATCAAAACAAACTTCTATACCACAAACATTACAACAGGTTATTACACAAAACAGTGCAGGCCAACCCGTCTTGTCATTTATTAGAATGGCAGGCAATCAAAATACCACACAACCACAACAGAACATTGTACAGTTTGTCAATCCTAATGCTAGTGCATCACCTCGTCCCCAGGCTTCTCAACAGCAGGGTATGGTCTACCTTCAGTTAGCAGGAGGCAAAGCCATACCTGTCTCTTTGGCTAGTTCTCAAATGACCATGCCTGTTGTTAAAGCTGATGGGACCAAAGGTCAAGCAGTAACTAAAGCTAGAAATGTTGTGCCAACACTAGTAGTCTCTCAGGGTAATACAATACAATTGGCCAATGGTCCAGCTGTAACCAGTAGCAGGATTAACTCACCTGTTTCTAGGTTCCAGGTGGCTGGTAACATTGGACATGTTGCAAGATTGTCGCAGCCACGAATTCGTAGTCCCCTAGTTAATCCTGGCACAACAAGTGCTCGTCCTGTCATAGCCACTGTAGGCATGGCTGCTAGGCAAACTCCTGTAGATAATACACCCACTACTGTCCCGCCGCCATGGAACAATCCTAATCTAGTCATAAGAACGAGGCGGGCGGCAGTACAGGAGGCCTGCAAGACAGGGGTTGAAAATGGTGAAATATCTGTAGTTCAAAACCAAATTGTTAGTGTAAAATCACCACAAGTTGTGTCAAATGTTACAATTAATATGGTAGACTCTACTAATCATATACCTGGTGCTAATGTAGAAAATAAAAATGGTTGTGTGACCACTGAAGTTAAAGATAATGGTTAG

Transcript

Bpl_scaf_59469-1.33

TTCTTATATTTACACGATTCTTGAATACATGTATATTTCTGACTTTCTAACATACAAATTTTTTTATGGATGTTAAATGATTTTTAATATTTTTTCATATCAGTAGTAAATGGTCACCAAGCTATAACAACAACCGCCAGTTCTACTGTTACCTTGACAACCATGTCAACAACAGTAAGAACAACATCTGTACAGTTACCAACAACATCAACAGTCATGGCTAGTCAGAAACCTGTCATGAGAGTTAGTCCACTTACAGCTGATTCACAAGTTTCGTCATCAATAATAAATGTAACTGACTCATCAGGGATAAAGATGTCCACTGGGCCAGTTCCCACTAAACCTGTGAAGAAAAAACAAAAGAAAGATGTCAAGAAAACAGAATTTTATTGTAATACCTTAGAAGAAAAGAAGATGAGAGAACGTGAACAGAAGTTGGATTATATTGCTAGAATGAATGAAAAACATTGTTCCCGTGTGCCTGTGTATGGACAAGATTTATGTCACACCGTAGATGTGTTCCGAGACATGAATAAAACATGTGTTAAAGACAATACCTGGAAAGGATTGGGCATGGTGTATTGTCATAATGTTCATAATTCTTCTTCTAATATAAATCCATCCAGTTTTCACTGGAAACAAACCAAAGTGCTTTCAGATCTTGTAAATACTCCAGAACAGTTTCTTAAAAAAATGGAGGACATTGTGCTAAGGTATGCATTCGTCACACCACCGGTTACTGCTCCAAGAATTCGTATGCATGTGTCGCATCCTCCTCCACATCATCTGGTAGATGAGAGGAGGAGGATAATGATGCTACAGTCTGAACTGTCTCCAAAGTCTACTTGTCTTCATCCAATATCAACAAGACTTGCTGTACAGTTTCCAGAGAAACGCTTGATTCAGTATGATTGTGGTAAACTTCAAGTATTAGATATTTTATTACAAAGACTTAAAACAGAAGGACATAGGGTACTTATCTTTACCCAGATGACAAAAATGTTGAACATTTTAGAATCATTCCTTAATTATCACGGTCATCGATATCTCCGTCTGGACGGAACAACCAAAGTAGAACAACGTCAGTTTTTGATGGACAGATTTAATGCAGATAAAAGGATATTTGTGTTTATTTTATCAACACGGTCAGGTGGTATAGGTGTAAACTTGACCGGAGCTGATACAGTGATATTTTACGATAGTGATTGGAATCCTACCATGGATGCTCAGGCTCAGGATCGATGTCATAGGATTGGTCAGACTAGGGATGTTCACATTTACAGACTTATCAGTGAAAGAACAGTAGAAGAGAACATTCTAAAGAAGGCTAATCAAAAGAGGATGCTGGGAGATATGGCCATCGAAGGTGGAAACTTCACTACTACATTCTTTAAAGAGCAAACAATCAAAGATTTGTTCTCAGAACCATCGGGTTTAGACTCGTTGGTGAAAGAGAAACAAGAAAAGGAGGAAACACCTCCACCAGAAGCTAGTGATCTGAAAATGAAATCCTTACAAGAGGTAGCTGGAGATGAGGGAGATGATGAAAAACCAGTAGGAGACACAAGTGTTATCAACCAGTTTGAAAAGGCTTTGGCCAAAACAGAAGATGAAACAGATGTAGTAGCTGTAGAGCAAGTTAAAGCAGAACAAAAAGCTGAATTAGCCGAATTTGATGAAAACATTCCATGGGATGAAAGAGAGGCTGAGAGAAAAAAGGAAGAAGATGAATCTAAAGTAGAGATGGAATTAGCTATGCTAGAAAAAGAGCTGACACCTGTAGAGAGATATGCTGTTAATTATATGGAAGAAGAAATGGATCCTTTAGCTGAAGAACTACAAATTGCAGAGTGGGAACTTGGTAGATTAAAGGCTTTGAAAGAAGAGGAAGAACGACGACTAGAGGTTGAGGAAGATGAAATGCTTTTCACATATACCAGGGAGGATGCTTTTAACCAGGTGAAGAAATCAGTCAAGAAATCCAAATCTGTTGGGGCCAAGGCAAAAGCACCTTCTCGTACCCCATCAGGACGCAAGAAGCCTGTTAAGAAAAAGGATGAGAACTTCGTCATTGATGAAGATAAAAGGAGGTCGGATCAGAGTCTTTCTGATCATGATTTTGAAAAAACACCAAAGTTAGTTAGGCCTGTTGGTAGACCTGCCAAAAATAAAACCCCCAAACCAACACCAAAAGCTACTGCTAAAGGTAGAAGGTCTAGCAAAATAGATGTAGAAACAGTAGAAGAAGTTCAGAATGAAACCCCAAAACAAAATAAATCAAAAAGACGTCAATCAAAGGGATCACCTAAAGCTTCTACAGATGAAAAAGCCAATGCTTCAAAACTTGTCTCTAAGATACTCGCAGCACAAGCCAATCAGAAAGCAGCAATTTCTTCCCCACAATCAAGTTTAACTGCCATACAACAACAGCAACAAACCACATATTCACAGCAACTTCTGGCTCAGAGTCAAAAGGCTGCGTTATCAAAGGCACAATTGGCCTCAGCCATACAGAAAATACAATCTCCAAACCTATCAAAACCCACACTACAACCACAACTTCTTTCAGCTTCTCAGTTACAACATCTCAAACAGATAATCTCAAATGCTCACCGCAATATTACACCAGGACAACCCAATACTGGTGCACTCCCTCAACAGACACTACAACCAGGACAAACCTACATACCACAATCTCCAGTAAAATCTGCTACATTACAAAATGCAGCTGCACCGGTTCAACAATTGTTTTTCCAACATTCACCTTCTCAGCAAGGTCAGTTCGTAATCTCACAAGGTCAAAATATGGTACCGCAAATAATCACACAACAACAAATATCACAGATGCAGCAAATTCAAGGTACACAAACTGTAGTTACTCCTTCGTTTGTTCAGGTTCAAGGTCGAGGAGGGGTTACTCCTACTCTTCTGCAGATTCAAGGTTCACAGCCTGGTGCTCCTCCTTCATTGGTTCAAATACAACAGCCACAAAACATTCCTGCATTTTTACAAATTCAAGGTTCACAATTGCAATCTGGTTCAACTCCTTTGATTCAGGTTCAAGGTTCACAGCAGGCTTCAAGACAAGTTCAAGTTCAGGGAACAAAAACAACTGTACCAACTACACAAGTTCTCCACTTTCAAACTTCACCATCAGCTCTTCTTGCTCAGATTCAAGCCTCACGAGTTCATGGTAGTTCGCAACCACAGGTTCAGGCTTCAAGAATGCAGTGTTCCCATTCAGTTTTAAGTGCTACACAGAGGGCTCATCCAACCATTGTTCAAGCAACTCAGGGGACACAGTTGGTGATTCCACCATCTAACATGTCCTTGGCAAAGCAGTCAGCGGTAAAGAGTTCTCAGTTTCCTGGTTATGTACCTACCACTCAGACATCAGCCATCACCCAAGTTAAAGTTTCAAGTATTACAACTCCTTCAATAATCAATGTACAAAACATGCCACAACAAACCGCTAAATTAACCACAAATAAAATAGCACCTACACAATATGCTACAGTCCAGGACATTCAGTTAGTCGTGTCAAACGCTTCTAACATTCCAAAAGTTGTTGGGTCCCAGATCGTGACGAAAGCTTCACCAGCTATTCAGCAGACAAGACCTACAACACCACAACCAAGCATTCAAGTTGTTAAATCTCAAGTATCTCTGTCAGGTGGATCTTTACAACAATCAAAACAAACTTCTATACCACAAACATTACAACAGGTTATTACACAAAACAGTGCAGGCCAACCCGTCTTGTCATTTATTAGAATGGCAGGCAATCAAAATACCACACAACCACAACAGAACATTGTACAGTTTGTCAATCCTAATGCTAGTGCATCACCTCGTCCCCAGGCTTCTCAACAGCAGGGTATGGTCTACCTTCAGTTAGCAGGAGGCAAAGCCATACCTGTCTCTTTGGCTAGTTCTCAAATGACCATGCCTGTTGTTAAAGCTGATGGGACCAAAGGTCAAGCAGTAACTAAAGCTAGAAATGTTGTGCCAACACTAGTAGTCTCTCAGGGTAATACAATACAATTGGCCAATGGTCCAGCTGTAACCAGTAGCAGGATTAACTCACCTGTTTCTAGGTTCCAGGTGGCTGGTAACATTGGACATGTTGCAAGATTGTCGCAGCCACGAATTCGTAGTCCCCTAGTTAATCCTGGCACAACAAGTGCTCGTCCTGTCATAGCCACTGTAGGCATGGCTGCTAGGCAAACTCCTGTAGATAATACACCCACTACTGTCCCGCCGCCATGGAACAATCCTAATCTAGTCATAAGAACGAGGCGGGCGGCAGTACAGGAGGCCTGCAAGACAGGGGTTGAAAATGGTGAAATATCTGTAGTTCAAAACCAAATTGTTAGTGTAAAATCACCACAAGTTGTGTCAAATGTTACAATTAATATGGTAGACTCTACTAATCATATACCTGGTGCTAATGTAGAAAATAAAAATGGTTGTGTGACCACTGAAGTTAAAGATAATGGTTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR050520	Family	INO80/SWR1 chromatin remodeling helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45685	HELICASE SRCAP-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000812	Cellular Component	Swr1 complex	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0043044	Biological Process	chromatin remodeling	Interproscan
GO:0043486	Biological Process	obsolete histone exchange	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11320	EP400; E1A-binding protein p400	EC:5.6.2.-	ATP-dependent chromatin remodeling	ko03082	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_59469-1.33 global RNA-seq network