Gene detail

Detailed information of Bpl_scaf_61206-2.20 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_61206-2.20	ETS	Bpl_scaf_61206	168026	191440	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_61206-2.20

AATTATTGTGGATTGTATCCAGGACGTATTGGCCATGACACAAGGAAGTATCATGCCCATACTTTCGTTACTTACTTCAACGTTTATAACATTCAAGATTGGACACTGAGCTACTTCCTATTGGGATTACATTAGCTAAAATTCAAAAATTGTAGTGATGTTCAACACTTTATGTGTTTTACTACCATATATTTAACCACTCGAATATCTTCAAGCAGGGTTATGAGTTTTGGAAGCTAATCTTGGATTGTATTAATCGTTTAACGGAATATGACTTTAATTGAATATTTCATCTTTAAACATGATAGCGCTGCAAAGCATCCTCAACAATGGACAAAATATGAAGTTGGTGTCTGGCTGAAATGGTGCTCTGAGGAATATTGTATAGAACCTATTCCACCAGATAAAGTAGATATGAACGGTAAAGCTTTATGTTTGTTAAATCGCAGCGACTTTATGGAACGAATACCAAGGAATGGGGATGTCTTATATAATGCTTTACAAACACTTATACAGAAAAACGTCAATATAATTAATCCGATGTCTTCGGTATGCAATGTCAGAGCCAATATTCCAATGAGCCCATTTATGAAAACTGAACCTATATCGCCAATAATGAATCCGTTAGTTTTGACATCTGCCAATACCCAGACGACATCTATGCACGCGCCTAGCAGACCACGCCCATGTGTTCCAATATTACCTCATACACAATCATCACTTTTACCGCCAAATTACAGCAATCCCATGATGGAACGCAACAAACATTTCAGTAACACAGTATCAACAGTACCAGGAATTTTAAGTCCAGCTCCTAGCAATGTAGACACTGATAGTGCTTCAAGTGACAACGTATCATTATCTGACCCTGAAGGACAAGACAAAGAAGATAGCCTTATTGCGAAGACCAACGACCGTTTTCTACCTACAACCATTAAAACTGAAATACAACATTCCATACAGTCAGCCTTCCAAGCTGTTACAAATGTCATTAAACCGGAATCGGAATGTCGATTACTTTGGGAATTCATCCACCAGTTACTGCAGAATCCTATGTTTAGTCAGTTAGTATGTTGGGAGAATGAGAAAGATTTTATTTTCCGTATTAACAACCCTACTGGTCTTGCCAACATGTGGGGGCAGCAGAAAAATAGGACCAACATGACGTACGAGAAACTATCTAGAGCTTTAAGATACTACTATAGGATGAATATCATCAAGAAGGTTTCTGGGAAACGTCTTACATACAAATTTATGCAGCAACCATCAACGATACAAAAAGGACAACGAGGGGCTAAACCACATCATAAATGTGATTTATCAGTTTTGCCATCAGCGAATAGATTTCCATATCCGGGAATCAAGGAGGATGCAACTGACGAAAACATACCTCAAATTTCCCCTTCGTCGTGTGGTCCAGTTTTTAGTGATGGTCGCCATGACAAGGACAATTATAGACAAAATAAGACACGCCCGCCTCATTTCGAGGCTGCCACATATTCAGATAAATCTCCTAAATTTCCATCTCCGAAAATTCGTGACTTTGAAAATCACGACGAAAGCATGTCACAGTTGAGCAAAGATTGCATGGCAAACTCAAATTTTAATAATTTATCCTCTAATTTTCAAATCCCACAAACGTCATTTGATAAGAATCTACCACCGCTTATGGTTCGGACAAATATTATCAATGATGTACAGTACTCGCCAGAGGATAAACTCAAATTTAATGGATATATTAATTCAAGTTTTGAAACATTTCATAACAATACTAAGCAAACAGTTGATACCAATTTAAAACGGCGTTATGTTGATGGAATGACGTCTCCCCCGAAAAATATGTTTTGCAGCCATTTTAAGGAAGAACCTCAACAAGAACCTGAAGATTTGTCGCTTGTGTCAAAGAAAAAAAGAACCGATTTCGAACATACATGTCATTCAGAGAGAGGAATGCCAATACTAGAAGACGAGAAAAAATATTCTAAAGACGAAGAGAATAATATTCTCCCTCTGTTGATAAATTATAAAAAGACACCCGTCAGTGAAGATAGCTGACGAAATAGATATTGGTGTTTTTTGTGCTCTTTCAATTATAACCTTGTTACTATGTTACATATTTTTGTACAATACTTTTGTATTGGGTTTTTGTTTCATCAACATGGTCATATTCTAAGATATTTCTGGAAAAGTAGGTTAAATCTAGAGGGAAGCTTATACTGCTAACAATACAAATCGGTATTGTAAATGAATGAGTACATTCCTTCGCAGAGAAGCGAGTTTGTATCTTGTACTCCCGTTGTGGAGGAGCATTTCACACGTGCTCCACAGTGGTGTTTAATATTGTATTACGTCAGCAATTGTTCCGTATTGTTATGATCAACTTGTATCTTTTTTTTACCCAGATGAATATTGTTCATATGTAATTTATGACATGTTCTTCCGAAATATGCAATATCGAAATATGCACCGGTTCAGATTTTTCTATTAGATGAGAAAAATGGCATACGAATGTAGGTTATTTGTTATACTAATAACTCAAACCAAAGACACTCCACTCATTTTACTGTTTCATGGGAGATGGTATAAAGTATTATGAATGTATGATTGATTAAAGCGCATAATAGATGTAGACCTTTCCCAATATGGAGGCTTAATTTAATGATACTCTTACATTTGTTTTTTTTTCTCAAGAAAATGTTTTTTTTTTGTCATATCAAACTTCACCGTACATTTACCTGAAAGTCTAAAGCTTGATTTATTGTTTTCTGTTAAAGGTTTGTTTTAATATTTTTACCAAAAAATGGTTGTGCTTGAAAACAAATCATAAAAATAGTAAATTAGAATTTGTATCTTTCTGTTAAAAAAGTGAAATACAAAAATACAACACTATCGGAACAGTTCCAAAATCCAATATAAAATCGCAAAAAGAGTAAAAATCGCTACCTCTAACACAATTTCATGACCTCTCACTTTCCTGATAAATAGGTTGATATACAATTAATTGTAGATGGTGTTTTACGGTAGAGGGGTTGTGGTATAACGGTTAAGGTTCTATATTTGATATTTTTGATAGATGATGACTGTATATCGTCAATTTGAAGATTATAAGGTTAGGTTTGGGTTATTGGTTTTATCGGCACTCTAAGCAACTTTTCCTTCTCTCTATTGTTATTAACATATTTAATTGGACAGGATGAACTCATATAACGAACTGACCTTTGACCCCTGTCTTGGGTTAGTGTCTAGAAATCGTGGCTCTGTGGTTTGGTTTCAAGAAAAGAATCCATTTCAGTGGTGTTAATCAGTTGGTTAGAGGTCACCAAATAACCGAAACCATTTGGCCACCGATACCCATTTTGAGAAATAGAAAAAATTCAAGGAAATCTTTATAAATATTGCAAGCAAATTTGTTCATTAATATATTGAGATCAACTGAGAACGACTGGCCTTTGGACGTTGTAGCATATTTAGATTTGTTTAAGTTTCAAATCTGCCCGTGAGAATGTGTGATGTTGTATCTTGACTGTCTTTCATGATTTAAATGTGATGAGCTTTATCAGAGATGTATAGTGCTTTATGAAAACATATTTCATTATTATGTAAATTATATATTGTTAATAAAAAAAATGTCACAGATTATAAATCCGGTATTATCATT

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	ETS

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00178	Ets	Ets-domain	Domain	Interproscan
PF02198	SAM_PNT	Sterile alpha motif (SAM)/Pointed domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000418	Domain	Ets domain	Interproscan
IPR003118	Domain	Pointed domain	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR046328	Family	ETS family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11849	ETS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03211	ETV6_7, yan; ETS translocation variant 6/7	-	MAPK signaling pathway - fly	ko04013	PMID: 28812709
			Dorso-ventral axis formation	ko04320	PMID: 28812709
			Transcriptional misregulation in cancers	ko05202	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_61206-2.20 global RNA-seq network