Gene detail

Detailed information of Bpl_scaf_8775-11.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_8775-11.9	DNA POLYMERASE EPSILON SUBUNIT B	Bpl_scaf_8775	1150551	1171372	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_8775-11.9

AATGTGTGTGTCCATGTAAATGTCATGGTCTGGTAGTTGTAGTTCTTTGTCAATATTTGTTATCATTTACACAGATAAAATATGAAAGAGAAGCGATTCTTTAAAATTAGAACAAACCAACTAATTTTTATGGTGCCACGAGTGGCCAGTTAAAAATGCTGTCCACTACTCTGGCATAAAAATCATAAAAATCAACATGTAATCATAAAAATCATGTTTTGTACTGTACATATATATCATAAAAATGTTTCTATTTTAAGTTTTAAATGTTTTTTAGGAGTAGCACAATAGGTATTCCTCCTCCATCACTACATGGTACAGCATCGGACAAGAATAGACTGTTTACAGACAAATATACCATGCTTCTTCAGAGAACACAGAGACATGACCTGTTTACTCCACGGGTAGTTGGAGCACAAGTTGATGATGGTTCTAAAAAGTTTCAGTTGAAGCCAATAGAATATCTGTTAGGAAGTACAGCTAAACTTGGAGAAATAATTGTACTGGGAATGTTAACACAGCTAACAGAGAGTAAATGGTACTTGGAAGATCCTACAGGAGTTGTACAAATAGACCTGTCAGAGGCTAGTTTTCACACAGGTTTGTTTACAGAGAACTGTTTTGTATTGGCAGAAGGATGGTATGAAGATAAAATATTCCATATCAATGCCTTTGGATTTCCTCCACCTGAACCTGCTAAAACAACTAGGTCATATTTTGGAAATATCAACTTCTTTGGTGGATTTGGAAATCAGTGTGCGAAATCTTCAACTAAACTAAAACAAATAGAACAAGAAAATCAAGATGCCATGTTTGTTTTCTTGTCAGATGTATGGTTAGATCAAGTCAAGGTAATGGAGAAACTAAGAATATTATTTACTGGTTATGCAGAATTTCCACCCACCTGTTTTATCTTGTGTGGAAATTTCTTGTCTTCACATCAAGGAAGTCAACATGTAAAGATATTAAAAGAATGTTTTCACAACTTGACAGAATTATTGTGTGAATTTCCAACTTTAGTAGATAGCAGTAGATTTATATTTGTTCCAGGACCTCTAGACCCAGGACCAACTACCATTTTACCTAGACCAGCTATACCTAACTCAATAACAGAAGAAATAAGAAAGAAGATTCCCCAGGCCATATTTACTAGTAATCCTTGTCGTATACAGTATTGTACACAAGAAATAGTTATATTCCGTGAAGATATTGTCACAAAGATGTGTCGCAACTGTGTTAAATTTCCAGAAGACGGAGAAGTTCCAAATCATTTTTGTAAAACCATTGTATCACAGAGCCATTTGTGTCCACTTCCACTTCATGTCTGTCCTGTGTACTGGGCGTATGATGTAGGACTTCAGCTATACCCGTTACCAGACTTAGTTGTATGTGCTGACAAATTTGATCCATTCCATACCACTACTGTTGATTGTACAGTTATGAACCCGGGATCATTTCCAAGGACAGAATATAGTTTCAAGGTTTATTTACCAGCTACAAAACAAATTGAAGACAGCAAGATTGGGGACTGAATCCCCCACTTTATTAGCTCACCTGAACTTTCACTGTCCGTCCGTCATCGTCTTTAAACTTTTACATTTTAATCTTCATCTCTGGAACCACTGGGCCAATTGGAACCAAACTTAGTCGGAATGTTGATTGTCCTTTTCAAAGTTTTTTTTCTGATCTTAAATCCACCACAGGAAAAAAAAGGTCCAAAGAGGAGAAATAGACTGTTTTCAAATATTTTATGGGTATGAATAATAATTTATTGTTTATCTGTTTTGGATGAGTTTTTTTTTTTTTTATTTTTTTTAATTAATTCCTTAGGAATATCCTTTACAGAAAATTGACTATTATCGTCTTTGACATAAAAGAGGCCAAAATTAAGGTGGATCTTCAAAAAATTTTACAAAAATTTTCATCCAAAATTTAAACGTAGATATCAAATTTAGTGCCTTTCTTGAATAACCTTCTTCAGGTACACTCAAAATCAAAAGATTGGAAAGCCAAATAATTTGCAAATCTTTGTGGATCAATAAAACAAAAAGACCTAAACAGAATAGCCAAAATCAGCTAATGTCACTAATGTCACTAATGTCACTAATGCCTGAAGGGGGAGAACCTTAGTTTTAATAATAAATACATAATTTAAGAACTGCAAATTTCAGTAATAAATATATCTAATTAACCATGTCAGTGCTGAAACATGGGCTACTGGGCGGATGATACCCTCTGGGACTAATGGTCCACCAGTGATAGTTTATTAACAGTTTGGTGAACTTCTTATAACAGCTTGACTTTTTTTTAAATGAATCCCAATTTCAAATACTATAAATACAATGTCATTTGGAAATACCTGTGAAAACTAATTTCTGGATAAATAAGAAACCAGTGTATATACCGGTATACATAACCGTGCATTTTTGTGTAATTCGTTTCTGTTCTGTATGTTAATATTATGTAATTGTATTTGTGACCAATGATAATGTATTGTTATCAAGTTAATGTAAAAACTAGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04042	DNA_pol_E_B	DNA polymerase alpha/epsilon subunit B	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007185	Domain	DNA polymerase alpha/delta/epsilon, subunit B	Interproscan
IPR016266	Family	DNA polymerase epsilon, subunit B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12708	DNA POLYMERASE EPSILON SUBUNIT B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006261	Biological Process	DNA-templated DNA replication	Interproscan
GO:0008622	Cellular Component	epsilon DNA polymerase complex	Interproscan
GO:0042276	Biological Process	error-prone translesion synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02325	POLE2; DNA polymerase epsilon subunit 2	EC:2.7.7.7	Purine metabolism	ko00230	PMID: 28812709
			Pyrimidine metabolism	ko00240	PMID: 28812709
			DNA replication	ko03030	PMID: 28812709
			Base excision repair	ko03410	PMID: 28812709
			Nucleotide excision repair	ko03420	PMID: 28812709
			HTLV-I infection	ko05166	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_8775-11.9 global RNA-seq network