Gene detail

Detailed information of CAI8029690.1 in Geodia barretti Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
CAI8029690.1	5'->3' EXORIBONUCLEASE	contig_3420_pilon	47573	80138	-

Gene Structure

More details in Jbrowse Sequence

CDS

CAI8029690.1

MGVPAFFRWLSRKYPSIVVDCIEEKARELKGLKIPVDATQPNPNDVEFDNLYLDMNGIIHPCCHPEDKAAPEDEDQMMLAIFEYIDRIFNIIRPRRLLYMAIDGVAPRAKMNQQRSRRFRSAKEGREKIDDIGRIRSDLESRGVELPPKKPDHAHFDSNCITPGTEFMANLAVALQYYVHDRLNSNPAWQGIKVILSDANVPGEGEHKVMDYIRKQRGQPNHDPNTHHCLYGADADLIMLGLATHEPHFTILREEFKPNQPRPCDICGQVGHDMKECTGAAKSMEGEHDQFANTDVALEKQFIFLRLCVLREYLEKELRIDGLPFPFDLERTIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLIRLYKQVVPQTHGYLTHNGTVNLHRVQMMMTELGKVEDDIFRTRRDKDLHFKQKAKMRRRASKRSRSMYDNPSFTPQGQFAPAPLSASPSPIVNPRQEAYQMRKFSTSVADNKSAAASLRAQLKGGLTPQGEISSSSTPSQNPSNANGANTPITAARKRKREDSDSESEPEDNVRLWEDGWKERYYNNKFGVPADDEEFVKAVASAYTEGLCWVLAYYYQGCSSWKWFYPYHYAPFASDFKDITKVRNTFPRGEDAPFRPLEQLMGVFPAASGKFLPPAFRALMSEEHSTIIDFYPSDFKVDLNGKKYMWQGVALLPFVDESRLLRALKDFYHTLSPEEEKRNSLGCDRLYVHRQNRFYPFLKTLYESSSDSTKNQLVEINPEHTQGIRGTVLLDESMEEVLSNRGDVKSTVASLPDIQQSFAIGVKFQDPSYPMDHIYPAVLLPGMQCQTHEIIDQIIRRMIINIPLLDTDLNIKLLAMQTGNLSLLLLLIFPTELLLQDFVPQMTTATHLDHLILAQVITYAQDDMYGMSMELGRRRVQVHAAILVIGWYVSLGQGAAEDKLHWANVTNRAALCNDFTQAGFFHRRPTENGAGKWIIYLESGAVCYSNETCNRRYFNSTIQDRESKDRHANNGYGDFDTTAAFSKYKETNFVNPLMTSMLCFNDTRFFPDGLHIEGKDLFDRSTNHTLADHGQVVIPYCSSDVWLGGEDGTRHEDIIDDTPYGCRQFRYVPDADGLQFTFRGKIIFQSVLRDLDEMYGLSTTATELILAGSSAGGVGAMNLAKWVVQEFPNLTVKVITDSAWFVNFRDGINHQFAGLQKLSAPSGNDKTDTNQPTSSSVPIGQSSHVTATQSYMISSITNEYTSSSSVLIGQSIHVTQTQNYMISSSKTHSSMFTTPLATPSPSIMTSSLNIPIPTPASGSGSGSGDNNEEEATNDDEMMKRYAPLEFEANRYADHRDRRDLTSQDDGDLLKMFKSHESCMDTSRGFPCCLSAQCLLSGYNPVTNEPYFPRNVSLFVITSLYDAFILSRAISDVQVYSSDSDSIPIGLAVEYLTVVGEYGGVMHNSLVEVQESDIDLTFYASQCFQHIYFVTSSLWGEGRLFGSDPVQINSDIGAFRHTIQSGVWNSAPLAYDNGTTYTIMDAINVWYHGNGSRGMNFRDMCQTPHCNEECPESFIFNPLRPKEWPLVARVAVGTAVVAVAIFCILLKTYFYLWLKWLEHKQTIYLNSITPVDPDEEDPISGTAMEEGLRREFPMCTATQAISVACLDLHYSVTTRVGKQLKDEKKENFAPIVLDDLSPENELNGSETDPQEEPSECDEVLEAGRRRTMSSSSNALQKLKNAFSQHHTGTYHVPTFRDENIDESINRMTNGNVPKRKWSIRPSLHGRVSRSSDNSQDTFEEVPLRTSRTSDMCSGLMKKVFRTKRKKILKGISVYFNPGEMIGIMGPSGCGKTTFLDILTGRRKSGIFSGQIFINGVPLEENREWYTSNTGYVIQLARPYYEELTVRENLTLAAWIRLKDTAREKFQRVEQVMDVSGLLDLADTVVGGATGPGLSGGQKRRLAVALQLLKLPSVIFLDEPTSGLDAASSRELLAHLNNLAGSNRTVVLTIHQPRLEIFHMFDRLVLLSDGKVAYHGVPDKAYEVFVNALRSRYLQQRLIIPDLEDRNPADVIMDMLGNQKMRQLITDYYQSSGEPNLVNRAVQQAWTRERKYSLDLIDGKEGDGTSFWTQLKFILKGTRKAENTQNNLLARLGALEARATKRATPLVILYLPVIFFAYGVVLGTVYLQQDQPFLIMSGFCVYSVASALFMFPALFSYYQQALEIYSFEHLVEITRWSWPVFTQLVVVNVALNQAWVALLIWLILTFPKIAMRLSPPLAAVMGFSSGFFIPFRDIPWWYRWLTFINPNYYGFSASAFLLLKDFETACQRQENVTDFKCYPESGKYILRRFDFDEINPYYNITILLAMTIFFLLMSVLSNFWNHVTLSRGMKKVKIMARRLKRAASYDTASLFSTDDDTVPYIYGTQFDEREDFLVSNEVEQEEEEEEEEEEEDEPEEDDDEAMVAAAAGLLSPIAENQEEREGGPQSPVSEHEATPRRRSHDPHPWAQPHLLYPSGGVPLPTSMPEIPSAVSPQPSSPREKAMENWTRAVEITRKRRSNSIELDTFTSARSEPQTPEKNIPFHDVFNQRRATRMNSLGEGINRHCRRRKKSVRSVYLRDGETHTVWKPSAPSPVTPTAPPSHFADVVHEMMRQNGKMNLRERQRQLLSRVTATRQVLKEQNEELAAVAELTEEEGDEDKEGQQRSVSAPGQRDTPGRKMWQHLIKSVIDGKKESERDRKRNRKRSTVHFHEVVTNKVASMEPVVPRGSTLPSVSEQGEMGNGNIPVTPRRANRKTSVISRGRLDTVTPSGAIPFTEWKTQFYERQRIGRQESMKRFKSDYNLKARADSRLQRINSDNNLTLPVHRRVSVASGEDLEPRSKSVSQYRQMHARLRRSSSPDVLDYSDYEDHGEISDTSVPLDDMLSPLSSRSVSPSVFSDEEEQRRSKMHSRTPTAARAHQPLMKLDSEEARVVGNPSNMHKRLRGHHHRHQYQDNTRRGDEIIEIEPPARAPIKSPGSCDKARLQEETETVCQSLSRHHPGVLRHPDPLLHNRTSPQLVSLPQLGVSAVIPSFLLHRYSTTE

Transcript

Protein

CAI8029690.1

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF03159	XRN_N	XRN 5'-3' exonuclease N-terminus	Family	Interproscan
PF03283	PAE	Pectinacetylesterase	Family	Interproscan
PF17846	XRN_M	Xrn1 helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR004859	Domain	Xrn1, N-terminal	Interproscan
IPR004963	Family	Pectinacetylesterase/NOTUM	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027073	Family	5'-3' exoribonuclease	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041412	Domain	Xrn1, helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12341	5'->3' EXORIBONUCLEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004527	Molecular Function	exonuclease activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-