Gene detail

Detailed information of Chiridota_g16435 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g16435	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	chr_8	50275012	50287401	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g16435

atgactcacccctactacccctggcaatgtcagtcagagTGTTGGGTGTTCGACAGGGCCACAAACATattaacctttccaagttacgatatacgccacgcttactatagcaacgcggtaactaggtggggcaaacaaaccacaaattcgcaatcatgcattaccaatgcattgacatttagaggcaagttcatcgaaaacgctctccgtcagcacagcctgtccttactgaacactaactccccgacctaccttcatcctgccacaggctctctcacctgtattgacctgtctatctgttcccctaacctcctccctgactttagttggagagtcactgctgacctctgtggtagtgatcattaccctcttcttatacactccaatcttcaaatccccactgagcacacccccaactggaacctcgacaaggctgactggtccctttttgaaaccctctgtgactcacacctctccccccatcttctcgaggatgaggatcccatgtctaacttcagtaatatccttatcaacatcgccacctgctcaattcccaaaacctccaaacccccaaatcatccccccaacccctggttctcagatgactgcaaaaccgccatcaagaacaggaaaagagccctcaggaactttaaaactaacccgaccacccataaccttaacctctttcgcatcagccgtgccaaggccagatgcactatcaaggacagtaaaaccaacacttggaacaactttatctcttctctcaccaccaacacccccactaagaagatttggagaatggttaacagcttccacggcagagtaggcaaatcttccatctcccatctctcttggaatggagaccttctcaccgcaaaaaaagacatcgttgaccacctcgccgcctctttcagcaacatctcggcctcgaccaactactccaatgctttcaaaatcaaaaaagcttgcgatgaagcccggagaatcacttttccctctgacaactccgaaagctacaacacccctctcaccctttctgaattaaaccaagccatcagcgacgctggctgcacctccaagggcccagataacatcccctatcagtttctgaaacacctccccatcaaagccaccactaccctactcaccatcttcaaccacatttggtcctcacactcctttccccctatctggaggacagctattgtcatccccgtccttaaacctgggaaggatagcaccgaccccaccagctaccgacccatcgcccttacttgctgtctctgtaaaattatggaaaagatcattaatcagagactaaactggttcctcgagaccaacagaatcctctctcctcaccaaagcggcttccgaaaacgtcgcaataccctagaccagttaattacgctcgacaccgctatccgggaatcctttgcaaaaaaggaacacctcattgccatattttttgacctcgagaaagctttcgacactacttggaaatacggcattacccggaaacttcacaccattggcctcagaggccacctccccatctttattcaaaacttcctctcacccaggcagttccaagttcgtattggccacaccctctccaagccgtacccccaagaagagggcgtcccccaaggcagcatcctctcccccactctcttcaacctgagcattaatgacatcgggaatgaccttggccccagcatcaaacgtaccctctacgtggatgacttcaccatcttctactcctcccctagctttcctattgttgaaaataggcttcaaaccagcctcaatcagctgcaagtctggagcaacaataacggttttagattctccaaagacaagacagtctgcatgcacttttgtcatttcaacaacctccaccccaacccgaactttgtgctcaatgggaatcgcatccctaaagttgaaaacacaaagttccttggtctaactctagaccccaagctcacctacaagccacacatcaccaacctgaaactaaaatgcaatagctccctcaacctcctccgactgctctccaacactacttggggagcgaaccgctatgctctcctcaaaattttcaggctcaccattcgtgccaagcttgactatggcaatattgtttactgtgtcgctcacaactcatacctcaaccacattaacaccatccaaaatgaagccctcaggctttgtctaggagcctacaggacctccccaatcactagccttcatgttgaagccaacgaacccccctttctacttagatgtaaaaagcttagcctctcctatgcttttagagtcctcaccaacactcagaaccctgtttacaacctcattaggtaccccaatttctcctccctctttgataggactaaaaccctatcgccccccttcagcttacgcattaaatcagacctctttcaacttggcatcaaccccgccactctcggcacctattcctggcccacttttccgccttgggccaccccccttccttctgtccacctagacctctccacttataacaaaactcaaactcaccctaatctcttcatcaatctccacaaccaaatcaaagaccaactctcaaattacacctctatctatactgatggctccaaggaaggcaacaagacagctgctgctgccatcatccaagacatcaccctcagtagcagacttcctgaccactcatccatcttttcagccgaggctaaggccattctcctcgccctcaactttattgagtactctcctcttagtcactttgccattttctctgactctaaggctgttcttacttcattactcaatcttaaatgggataacctcacctgccacctcctcctccggaaactcttttctcccaccctctgcaggaaaagtgttcttttcttctggatacccagccatgttggcatccctggcaatgacagggctgatacagccgctaagcttgcccttaacctcctcccttccccttttcccaaaaccctctctgacatcaaaccgcttatcgcttctcttgttcgtgaccgctggcaaaccttatggaacttccaaattgataacaaactccatgttatccagcccacaatcccgatcaaatccaccatcaacaacctttctcgtatcgacaacgttcatattacccgtcttagaattgCTGCGGGACTTTATTATTTAGCGGAATTGGTTGAGGAGTACACTGTGGTTGCCGGAAGAGTCATAAAATGGATGCATTTGGTTGTTGCTGCAATATATGTGGGGATAATTGTGTTTGAAGATATACCCTATTCAGTCACACTAGTGGGATTGGCGTCTATTGGAATCTACTCCCTTATGCTTAAAGACTTTCCTTTCATCGAGCTCACATCCCCAGTTTTTATTACAAGCTGTGTCCTTGTCTTTATAAACCATTACTTGGCCTTTAGATACTTTTCAGAAGTTTGGCATCCCTTCTCAGAAATTTTGGGGTTCTTCACCCTTTGTTTGTGGTTAGTTCCGTTTTCATTTTTTGTGTCCCTCTCAGCAAATGACAACATCTTACCAACCCTTCAGAAAGCTCCAAATGGGGAAATTCAATTTCTAGAGCAGAAGTGA

Transcript

Chiridota_g16435

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00075	RNase_H	RNase H	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF04148	Erv26	Transmembrane adaptor Erv26	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR007277	Family	Svp26/Tex261	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052560	Family	RNA-directed DNA polymerase, mobile element	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36688	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0006888	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0097020	Molecular Function	COPII receptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-