Gene detail

Detailed information of Chiridota_g18815 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g18815	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	chr_10	22916860	22967855	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g18815

atggcggttgctgctagtaatatgcacgtactacgatggctgtgtgccgttgaaggattagctaaaacgtggtcaaagcatcactaccagatagaaattaaaaaacctaaatcatatagccacatactcaactcaagtgaggtcaaaaccaagaaatcctacagtagattcaaacaaaagattctttactttaagtctagtggctctttgctgaacctgctctcaaaagaacttatccaaatcatagaagcgactccaagcctgaatagcatacccaagagGTTTTTGTCTGATAATGGTCTAGAGCAGTGTAAGGATGGTCTTGTGAATCCAACGGTGGATACATTAATCCAGAGGGCATTGGATATTGATCTGAAGCAAATTGGTGGTAAAGGATTACGGGAGGATCTCGGCAAAGGAAAATCTGATTCTATTCAAGGCCCACTTGTTCTTCAGATCCAGAAAGTGCGCAATGTGTCAGCTCCAAAAGCCACGGAGGATACGTTTCATGGACCTAAGCTTCTAAAGTTACAACTCACAGATGGAGCCAATATACACCTTGCGCTGCTCCTAAATAGTATTTCAAAAATCAGTTTGGACACACCCCCAGGAACAAAGATCAAGATTGTATCTTCAGTAAAATTAAGCCAAGGATTTTTACTACTAGATCAACAAAACATCAAAGTATTGGGTGGTTGTGTAGATGAGATGGTGGAGAGGTGGAATCTTGCAAAGAGATTAGCGCTACATACAAGAAGCTTAGCTAGTGAGGGGGGACCACCCCCCTGGATACCCTTTGGTCAGCGTAACAGATACGGAACCAGACTTGATCCCAATGATACAAAGAAATCTCTGGAAGCCAAGCAGAAAGATACCACTGAGAATGACAAAATGTTTGAAGAGCAAAGGAAGGCGGCCATTCAGGGGCTGGGGCAACACCAGAGCAAGAAGTTTGGAGGGGGTAAACCCGTCCCGATTATCATATCCACCAAAGGGAGGGAGAATCCAGCCCCCAAAACAGCCTCCAGTGAAACTACCATACCTAGCAATTCAAGTGGAGGTGCTAAACCTTATTCTGGACAGGCTTTATACAGAGATTTGTCTTCTGAGGGCAATAAACCCGATGAAAAATCGGTTCAGCAGCTTCTAAGCATGGGCTTCAGCCGTGACGCCTCTATTAGTGCCCTCAAGAGGTACGCAGGGAACGTGAATGATGCTGTTGATTGCTTGGTcagcggaggaggaggaggaggattcagcgggggcggaggaggagaatacagcgggggcggaggaggaggatacagcgggggcggaggaggaggatacagcgggggcggaggaggaggatacagcgggggcggaggaggaggatacagcgggggcggaggaggaggatacagcggggacggaggaggaggatttagcgggggcagaggaggaggaggattcagcgggggtagaggaggagAAGGGATCCGTGGGGGAGGTGGAGGAAGAGGAGGAGGAGatgaacaattaaaagacaacaaagggaaggcaatgagggagggatgccttgctatttggcttcccacccccttcatccttcttggtgacttcaatgctcacaaccctctgtggggctctaataccaccacccctagaggcaagttcatcgaaaacgctctccgtcagcacagcctgtccttactgaacactaactccccgacctaccttcatcctgccacaggctctctcacctgtattgacctgtctatctgttcccctaacctcctccctgattttagttggagagtcactgctgacctctgtggtagtgatcattaccctcttcttatacactccaatcttcaaatccccactgagcacacccccaattggaacctcgacaaggctgactggtccctttttgaaaccctctgtgactcgcacctctccccccatcttttgaggatgaggatcccatgtctaacttcagtaatatccttatcaacatcgccacctgctcaattcccaaaacctccaaacccccaaatcatccccccaacccctggttcttggatgactgcaaaaccgccatcaagaacaggaaaagagccctcaggaactttaaaactaacccgaccacccataaccttaacctctttcgcatcagccgtgccaaggccagacgcactatcaaggacagtaaaaccaacacttggaacaactttatctcttctctcaccaccaacacccccactaagaagatttggagaatggttaacagcttccacggcagaaatcctctctcctcaccaaagcggcttccgaaaacgtcgcaataccctagaccacttaattacgctcgacaccgctatccgggaatcctttgcaaaaaaggaacacctcatcgccatattttttgacctcgagaaagctttcgacactacttggaaatacggcattacctggaaacttcacaccattggcctcagaggccacctccccatctttattcaaaacttcctctcacccaggcagttccaagttcgtattggccacaccctctccaagccgtacccccaagaagagggcgtcccccaaggcagcatcctctcccccactctcttcaacctgagcattaatgacatcgggaatgaccttggccccagcatcaaacgtaccctccacgtggatgacttcaccatcttctactcctcccctagctttcctattgttgaaaataggctccaaaccagcctcaatcagctgcaagtctggagctacaataacggttttaaattctccaaagacaagacagtctgcatgcacttttgtcatttcaacaacctccaccccaacccgaactttgtgcctaatgggaatcgcatccctaaagttgaaaacacaaagttccttggtctaactctagaccccaagctcacctacaagccacacatcaccaacctgaaactaaaatgcaatagctccctcaacctcctccgactgctctccaacactacttggggagcgaaccgctatgctctcctcaaaattttcaggctcaccattcgtgccaagcttgactatggcaatattgtttactgtgtcgctcacaactcatacctcaaccacattaacaccatccaaaatgaagccctcaggctttgtctaggagcctacaggacctccccaatcactagccttcatgttgacgccaacgaacccccctttctacttagatgtaaaaagcctagcgtctcccatgcttttagagtcctcaccaatacccagaaccctgtttacaacctcattaggtaccccaatttctcctccctctttgataggactaaaaccctatcgcctcccctcagcttacgcattaaatcagacctctttcaacttggcatcaaccccgccactctcggcacctacttctggcccacttttccgccttgggccaccccccttccttctgtccacctagacctctccacttataacaaaactcaaactcaccctaatctcttcatcaatctccacaaccaaatcaaagaccaactctcaaattacacctccatctatactgatggctccaaaaaaggcaacaagacagctgctgctgccatcatccaagacatcaccctcagtagcagacttcctgaccactcatccatcttttcagccgaggctaaggccattctcctcgccctcaactttattgagtactctcttcttagtcactttgccattttctctgactcaaaggctgttcttacttcattactcaatcttaaatgggataacctcacctgccacctcctcctccggaaactcttttctcccaccctctgcaggaaaagtgttcttttcttctggatacccagccatgttggcatccctggcaatgacagggctgatacagccgctaagcttgcccttaacctcctcccttccccttttcccaaaaccctctctgacatcaaaccgcttatcgcttctcttgttcgtgaccgctggcaaaccttatggaacttccaaattgataacaaactccatgttatccagcccacaatcccgatcaaatccaccatcaacaacctttctcgtatcgacaacgttcatattacccgtcttagaattgGTAATCGTTCGCGAGGTGGAAGACCATCCGGACCATCAAGAGAGAGAAATAACGATGAGGATTACCCAGCACAGCCCTCAGGTCCAACAACTCTTTTTGATTTTGTCTCGTCAAAACTTGGTAAATCAGGTAAAGACAGTGATTTTGACAGCCAAAGGAAATTTGAAGACAGAGATCGAGATTATGAAAAAGATCAACCAAAATCATTTAAAGAGTCTGGCATTAAATTTGCCCATGGACGGGACAGTGGTAGAAGACAAGGACCAAAGGACAACAGATACGGGGAAGATCGCTCATCGGATGCGAGAAAGAATCAGAACGGAACTAGAGATCGTGAAGACAGTTATAACAGCAGGAATACGAGGGAAGATAGAAAACCCAACTCACGGCGGAATGATACAAGAGGTCAGTCAGATAGGAGATGGTCAGATCGAGATCAGATGGGCACGGACAGGGAGAACAGAAGTTCAGACTACGACAGCAGGGGTTCTGACAGGGAGCAAAAAGGTACCTCACAAGGACAGCTTGTTAGGACCTCTGACAGAAGAAACGCTGCTCCACATCAAAGAAATAATAATTACACGCTGCCACCTCGGTTTCAGAAAAAGCAGGAAACGGAGAGTAATAAGAGGACTGAGAGATTTGACCAAGGAGAGAGGTACAATAGAAATGACCGACCTGAAGTGGTCAATCATAAGGATCGTGGTGACAGGACCAGTGCCAAATTTCAAAACAATAATAATGTAAAAACAGACTTTAAGCGACCACCAATGATAAAACAGCATTTCCCAGATGAGCAAGAACAGATTAATAACGGTCTACAACAACTACAAATCCACGAACAGAACCATCATATACAGCAACAGCCCCCTCTTTTACAGTCGCCTCAGTGGAATGTTGGGGACATGTGCCTTGCAAAATACTGGGAAGATAATCAGTTTTATCATGCAACCATCACTGCTCTCCACCCCACTGGTCGTACATGTGTTGTTTTCTTCTTGGAGTATGGCAACCAGGAAGAAGTTCTAGTGAATGATGTGAAGCCACTGCCTCAATCATGGGGTGGAGTTGCCAACTCCCTTCCCCCAATGCTGCAAAACATCATGAAGCCCCAGCCAGGAATGATGTCTGCCCATCTAGCACCGTACCACCCAGACCTGAGGAGACCCCAAGATCCCAGACGATTCAATCAAAGACCCATGCAGCAGGAATTCTTCCCAGGTCAAAGgtcaacaaagcaaagctggcaatgtcagtttctggatttggatgggaagtggatgaacaccaggttttcaccctgctcttttgtagagggaatcagagaacttagcaggggtgaggaaacctactgtcagaaccaccgtttaagatccccatccaatggatgccatctgctctcatctacttacgccaaagaaagcggagatgagcacgggactgatgagtcatcatggccagagtatCATTCTAAGTTTGTagacctcagtggtgtagtggttagtgctttgtcctctcacccacacgctccgggttcaaatcccggtgggtctacaaccagtgagttcacaactggttatcaaaggctgtggccatcatga

Transcript

Chiridota_g18815

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00075	RNase_H	RNase H	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00627	UBA	UBA/TS-N domain	Domain	Interproscan
PF06003	SMN_Tudor	Survival motor neuron protein (SMN), Tudor domain	Domain	Interproscan
PF08585	RMI1_N_C	RMI1, N-terminal OB-fold domain	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR002999	Domain	Tudor domain	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR010304	Domain	Survival motor neuron, Tudor domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013894	Domain	RecQ mediated genome instability protein 1, OB-fold domain	Interproscan
IPR015940	Domain	Ubiquitin-associated domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR042470	Homologous_superfamily	RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR047379	Domain	Tudor domain-containing protein 3, Tudor domain	Interproscan
IPR052560	Family	RNA-directed DNA polymerase, mobile element	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36688	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-