Gene detail

Detailed information of Chiridota_g18835 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g18835	DTDP-4-DEHYDRORHAMNOSE REDUCTASE	chr_10	23688395	23715687	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g18835

atgacaaagcgcctatgcagtgaccttgaccttgaccccccctcccctccccgtgacccacctgctaccatcattgaccattctgcaaccccaatcccaaaaatccttataatccatgccaccaacaagcaggaaagctttaaaaaagtttctcctttcctcatccataaagccctctttggccttgtcggtaccctccccaaagtctctacccttagatccggtgatctcctggtgcactgcaccagggacacacaagccaccaccctcctttccaccaaaaccctatccaactctggtatcgacatcacagtcaccccccatcgttccctaaactccagcaaaggcgtcatacgcacccgcgaccttgcgtacatgaccgatgacgacctccaagaagaactagctaaccaacatgtaaccgaagcccgtcgtctcgttctaaagagagacggagccgaaactcccaccaacaccatatttctcactttcgcaactccaactctcccctcccacatcattgccggctacctgagaatccaggtcgccccttatattcctaaccctttacgttgctacaattgtcagaggagccttaaggccaattctgaagaaatcgaccttctggcctccaccttcaacccggtcgtcttctgcctacaagaaactttcttgaaaaccaccgaccattactcccttaacaactttgcttgctatcacaaacatcaagtggatgctgacagggcctgtggtggcgtctccattctcgttagacacgatatcccacacagccctgttcgtgtgcacaccgaccttcaggccatctgtatttctatctccctccacaaaactttcactctctgcaatatctatctccctcccaacaccaacattcaaccaaccagccttaacaacctcatctctcagcttcccacccccttcatccttcttggtgacttcaacgctcacaaccctctgtggggctctaataccaccacccctagaggcaagttcatcgaaaacgctctccgtcagcacagcctgtccttactgaacactaactccccgacctaccttcatcctgccacaggctctctcacctgtattgacctgtctatctgttcccctatcctcctccctgactttagttggagagtcactgctgacctctgtggtagtgatcattaccctcttcttatacactccaatcttcaaatccccactgagcacacccccaactggaacctcgacaaggctgactggtccctttttgaaaccctctgtgactcacacctctccccccatcttctcgaggatgaggatcccatgtctaacttcagtaatatccttatcaacatcgccacctgctcaattcccaaaacctccaaacccccaaatcatccccctaacccctggttctcagatgactgcaaaaccgccatcaagaacaggaaaagatccctcaggaactttaaaactaacccgaccacccataaccttaacctctttcgcatcagccgtgccaaggccagacgcactatcaaggacagtaaaaccaacacttggaacaactttatctcttctctcaccaccaacacccccactaagaagatttggagaatggttaacagcttccacggcagagtaggcaaatcttccatctcccatctctcttggaatggagaccttctcactgcaaaaaaagacatcgttgaccacctcgccgcctctttcagcaacatctcggcctcgaccaactactccaatgctttcaaaatcaaaaaagcttgcgatgaagcccggagaatcacttttccctctgacaactccgaaagctacaacacccctctcaccctttctgaattaaaccaagccatcagcgacgctggctgcacctccaagggcccagataacatcccctatcagtttctgaaacacctccccatcaaagccaccactaccctactcaccatcttcaaccacatttggtcctcacactcctttccccctatctggaggacagctattgtcatccccgtccttaaaccggggaaggatagcaccgaccccaccagctaccgtcccatcgcccttacttgctgtctctgtaaaattatggaaaagatcattaatcagagactaaactggttcctcgagaccaacagaatcctctctcctcaccaaagcggcttccgaaaacgtcgcaataccctagaccagttaattatgctcgacaccgctatccgggaatcctttgcaaaaaaggaacacctcattgccatattttttgacctcgagaaagctttcgacactacttggaaatacggcattacccggaaacttcacaccattggcctcagaggccacctccccatctttattcaaaacttcctctcacccaggcagttccaagttcgtattggccacaccctctccaagccgtacccccaagaagagggcgtcccccaaggcagcatcctctcccccactctcttcaacctgagcattaatgacatcgggaatgaccttggccccagcatcaagcgtaccctctacgtggatgacttcaccatcttctactcctcccctagctttcctattgttgaaaataggcttcaaaccagcctcaatcagctgcaagtctggagcaacaataacggttttagattctccaaaaacaagacagtctgcatgcacttttgtcatttcaacaacctccaccccaacccgaactttgtgctcaatgggaatcgcatccctaaagctgaaaacacaaagttccttggtcttactctagaccccaagctcacctacaagccacacatcaccaacctgaaactaaaatgcaatagctccctcaacctcctccgactgctctccaacactacttggggagcgaaccgctatgctctcctcaaaattttcaggctcaccattcgtgccaagcttgactatggcaatattgtttactgtgttgctcacaactcatacctcaaccacattaacaccatccaaaatgaagccctcaggctttgtctaggagcctacaggacctccccaatcactagccttcatgttgaagccaacgaacccccctttctacttagatgtaaacagcttagcctctcctatgcttttagagtcctcaccaacacccagaaccctgtttacaacctcattaggtaccccaatttctcctccctctttgataggactaaaaccctatcgccccccttcagcttacgcattaaatcagacctctttcaacttggcatcaaccccgccactctcggcacctattcctggcccacttttccgccttgggccaccccccttccttctgtccacctagacctctccacttataacaaaactcaaactcaccctaatctcttcatcaatctccacaaccaaatcaaagaccaactctcaaattacacctccatctatactgatggctccaaggaaggcaacaagacagctgctgctgccatcatccaagacatcaccctcagtagcagacttcctgaccactcatccatcttttcagccgaggctaaggccattctcctcgccctcaactttattgagtactctcctcttagtcactttgccattttctctgactcaaaggctgttcttacttcattactcaatcttaaatgggataacctcacctgccacctcctcctccggaaactcttttctcccaccctctgcaggaaaagtgttcttttcttctggatacccagccatgttggcatccctggcaatgacagggctgatacagccgctaagcttgcccttaacctcctcccttccccttttcccaaaaccctctctgacatcaaaccgcttatcgcttctcttgttcgtgaccgctggcaaaccttatggaacttccaaattgataacaaactccatgttatccagcccacaatcccaatcaaatccaccatcaacaacctttctcgtatcgacaacCATTCAAAACCACAGAATGGCACTATGAAGGTTTTGATCACAGGAGCCAGTGGGTTGTTAGGAAGGGAGGTTGCCTCTGATTTTGAGAAGGCCGGATGGGAAGTACTTGGACTTGCATTTTCTCGAAGTGGTCCCCGACTCCAGAAAGTAGACTTAAGGGACTCGTCTGCTTTGAAGAAAGTTATTAGTGAATTTCAGCCTTCTATTGTGATCCATGCCGCAGCTGAAAGGAGAGCTGATGTTGTGGAACAGCATCCAGAGGAAGTACAGAAACTTAATGTGGATGCCACGGCAGAAATAGCTAGGATATGTGCCAAGACATCTGTGCCTGTTATCTTCATTAGTACTAATTACGTCTTTGATGGTTCCCATCCACCTTATAAACCCCAGGATGCCCCGCATCCTCTCAATAAATACGGGGAGAGCAAACGACAAGGGGAGCTAGTTACTCTAGCAGAAAACCCAGACGGCATTATTTTACGTCTTCCGCTATTGTATGGCAAAGTCGAGAAGTTAACGGAAAGTTCAGCGACTTACATCCTCAACTCTGTCCTGAATACAGGATTGACTTTGCCGGTTTGCGACTTTCAGCAACGATTCCCAACTCACGTCAGAGATGTCTCTAGTGTACTTCTCCAAATGGCTACAAAAATAATACAGGGTACCAAAATAAGAGGTATATTCCACTGGTGTTCCTCGGAACAGCTGACTAGATACGCCATGTCAGTCATCATAGCCAACGCATTCAAACTTCCACATGATCATCTTGTTCCCCAGAAGGAACGCGGTTCAGGCACGTCACGTCCGGCAAATGCTCAGCTAGACGTACAAGAGACTGTAAGACTTGGTTTAACGGTCAACCAAACTCCTTTTGCAGATGGTATCAAAGAAAGCCTAGCGCCATTTGTAGATGGGAAAAATTAA

Transcript

Chiridota_g18835

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00075	RNase_H	RNase H	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF04321	RmlD_sub_bind	RmlD substrate binding domain	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR005913	Family	dTDP-4-dehydrorhamnose reductase family	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR029903	Domain	RmlD-like substrate binding domain	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10491	DTDP-4-DEHYDRORHAMNOSE REDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0006556	Biological Process	S-adenosylmethionine biosynthetic process	Interproscan
GO:0048269	Cellular Component	methionine adenosyltransferase complex	Interproscan
GO:0048270	Molecular Function	methionine adenosyltransferase regulator activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-