Gene detail

Detailed information of Chiridota_g2224 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g2224	CRUMBS FAMILY MEMBER	chr_2	19866515	19929136	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g2224

ATGAACAACAATAGTAGAAATCAACGAAAGGACACACATTGTAGCTATATCAGTGGAGTATCATATCAACTTTCCAAGATCAATGCGGGGATCAATAGAATGAATTTCGCGAGGAGCATACTTCAGCTATCTTTATTTTTCATATTTTTATATAAGCAACAAGTACTTGCACAGGAAGGAGGATGTGAGGGGGTAGAGTGCCAACACAATGGCACATGCTTCTCAAGCCCGGACAATGTGAATTTCTTATGTTATTGCAAAAGGGCTTACACCGGAAGATATTGTGAAAGTGAAATTGGTCCGGTGGATTGCACATCAGTAAAGTGTTTGAACGGTGGAACATGTTTTCAAAGTGAAACGAATGAGAAAGTTATCTGCAAGTGTGCAAATGCTTTTACTGGCCAGTTCTGCGAAACTATGGCAGATCCTTGTTTCAACCAGCCATGTTTCAATGGAGGCATATGTAGAAACACCACCTCTGGCGGATATGAATGCCTTTGTCCAAGTGGGTGGAGGGGAGAAACATGTGAAGAAATTATATCCAGCTCAGCTATGGGATGTGACAGCTCTCCCTGTCAAAATAGCGGTGAGTGCTATTCATCGGCAGAGGACACCTCCGTTTTTATTTGTTCATGTAAGAGTGGCTACAGTGGAGAGCTCTGTCAGATCACGGAAGGTCATGTCTGTCAGCGAGAGATCTGTTTGAACAATGGCACCTGCTTTGCTTCATCCAGGAATTCTTCTCTGTTCCTGTGTATCTGTACTGAAGGCTATGAAGGATTTCATTGTGAGAGGCAGATGAATCAAGATCTCTGCACAGCCTTCCCTTGCTTAAATGGAGGATCTTGTCTTCTGAATGTATCGGTCACCGAGACTCAGTTATCTCACTGCCAGTGTGTAGAGGGATTCACAGGAGTACGCTGCGAGACCTTAGCAGGTGTCTGCAGTGAAAATCCTTGCTTTAATGGAGCAACATGCAGCTCAACCGCTGGTCAATTTATGTGTCAATGTCCGTCAGGCTTCAGAGGAACCCAATGTGAAATTTCAGAATTACCTTGTGACTCGAACCCTTGTCAAAATGGCGGCTCTTGTTTATATGGAGAAGATTATTTAACCTGTGGATGTCTTGAGGGGTTCTATGGAGATCGTTGTGAAAATCAAGACAGACTATGTATTCCTAATCCATGCTTCAACGGTGGTTCATGTTTTTCCGGTGTTCAGAATCGATATTTTTGTTATTGTCCTGAGGGATACTCAGGATCCCAATGTGAAGAAAATGATCCTTGCAGTATGGCTCCTTGCGCAAATAACGGTGACTGCATTCAATCGCCTGATGGTAACTTCACTTGTTCCTGCCACATGCCATTCACAGGACCCCTTTGTAATGATTTGCTTATTACAACTCCTGGGCCAATGTTAACAAGCCCCCCTAAGAAGATGACGACCTCTGAAATTGTGAGACACACAACTCGGAAGAACACAACGGAAAAACCTAACAATGAATTACCTTGTGACTCGAACCCTTGTCAAAATGGCGGCTCTTGTTTATATGGAGAAGATTATTTAACCTGTGGATGTCTTGAGGGGTTCTCTGGAGATCGTTGTGAAAATCAAGACAGACTATGTTTTCCTAATCCATGCTTCAACGGTGGTTCATGTTTTGCCAGTGTTCAGAACCAATATTTCTGTTATTGTCCTGAGGGATACTCAGGATCCCAATGTGAAGATAATGATCCTTGCAGTATGGCTCCTTGCGCAAATAACGGTGGCTGCATTCGATCACCTGATGGTAACTTCACTTGTTCCTGCCACATGCCATTCACAGGACCCCTTTGTAATGATTTGCTTATTACAACTCCTGGGCCAATGTTAACAAGCCCCCCGAAGAAGATGCCGACCACTGAAACTGTGGGAGACACAACTCGGAAGACAAAGACAACGAAAAAACCTAACAGTGATGTGTGCACGCCTAGTCCCTGCCTCAACGGTGCAAGATGTATACCGTCAGATCCAGATGGTGATGGTGAATTTAGTCCAGGTTGTCTATGTCAGCCGGGGTACACAGGGTTAACATGCAGAGTGGTATTACCAGTTCCTAGAGTGTGCAAGAATAATCCTTGTGGTCCAATGGGCGTGTGCTACTCCAACGCCAGTGCTTCTAAGGGCTTTGGATGTTTGTGCGAACGAGAATTTAAGGGAGAGAACTGTTTGGAGAGTATCATCTCTCCAACAAACAACCCAACATATGTCCTGCCCTGTAGCTCAAATCCCTGTCAAAATGGGGGCAGCTGTGAAGACCGTGATAGTGATAGTTACATTTGCAGATGTCCACCGTATGTTGTTGGAGAATCATGTGAAACAGACATAAGAGACTGCACCCACAATGATGTTGTTTTCAGAGAGGGGAAAGTGAGAAAAGATGGATGCATGGATTGCAACTGCTCAAACAGTGAATGGCTATGCACTGATGACAGGTGTTATTGTGAGGTGGAGGATACCAGATTCAGAAATGGTCAAACATACACAAAGGCCTGTGTTACATGCTTTTGCTATGATGGAGGTTGGTTATGCCCAGAAATTGATTGCACTGGAACCTGCAGCTACCACAACCAGGTTTACTTCAATGGGGAGATTAGGGAAGGCTCATGTGAAGTTTGCCAATGCTCAGAAGGTGAATGGTTCTGCACAGATAAAGAATGTGAGGTGTGTATTTATGGAGATATGGTGTATCCAGAAGAGGCGGCCAGGGATGAAAACTGCAACACATGgctccaaatcagccttaaccacctgcaagtctggagcaacaataacggttttaaattctccaaagacaagacagtctgcatgcacttttgtcatttcaacaacctccaccccaacccgaactttgtgctcaatgggaatcgcatccctaaagttgaacacacaaggttccttggtctaactctagaccccaagctcacctacaagcaacacatcaccaacctgaaactaaaatgcattagctccctcaacctcctccgactcctctccaacaccacttggggagcggactgctatactctcctcaaaattttcaggcttaccattcgtgccaagcttgactatggcaatattgtctactgtgtcgctcacatttcatacctcaaccacatcaacaccatccaaaatgaatccctcaggctttgtctaggagcctacaggacctctccaatcaccagccttcatgttgaagccaatgaactcccctttctacttagatgtagaaagcttagcatctcctatgcttttagagtcctcaccaacacccagaatcctgtttacaacctcattaggtaccccaatttctcctccctctttaataggaccaaaaccctatctcctcccttcagcttacgcattaaatcagacctcttccatctcggcatcaaccccgccactctcggcacctactcctggcccacttttctccttgggccaccccccctcccctctgtccacctgggcctctccactcatcacaaaactcaaacccaccctaacctcttcatcaatctccacaaccaaattaaagaccaactctcaaattacacctccatctatactgatggctccaaggaaggcaacaagacagctgctgctgccatcatccaagacatcatcctcagtagcagactccctgactactcatccatcttttctgtcgaggctaaggccattctcctcgccctcaactttattgagtactctcctctcagccactttgccattttctccgactcaaaggctgttcttacttcattactcaatcttaaatgggataacctcacctgccacctcctcctgcggaaactcttttctcccaccctctgcaggaaaagtgttcttttcttctggatacccagccatgttggcatccctggcaatgacagggctgatgcagccgctaagcttgccctcaacctcctctctaccccttttcccaaaaccctgtctgacatcaaaccccttatcgcttcccttgttcgtgactgctggcaaacctcatggaactcccaaattgataacaaactctatgtcatccagcccacaatcccgatgaaatccaccatcaacaacctctctcgtaacgacaatgttcatattacctgtcttagaattggtcacacccacctcactcactcccacctccttattggttccccccaacccctctgtaacaattgccactgcatccttactatccatcacgttctcctcgcttgccccctgtacaaccttcccagagcttccctcgctcccacaactcaattgctgaagtctttcaaaaaaatcctgcggataaaatga

Transcript

Chiridota_g2224

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00075	RNase_H	RNase H	Domain	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR051022	Family	Notch Signaling and Cell Fate Determination	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-