Gene detail

Detailed information of Chiridota_g27215 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g27215	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	chr_15	37563316	37569511	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g27215

ATGAGCAGAAATGTAAATAGCACAGCTACACTTCAGTGCGAAGTTGGATACGAGGCAAATCTTGCGGTCATCAAAATCTGCTCTCGAGATGGATCTTGGGTTGGGGACGGAGCGCCGGAATGCAAAGCCTTTCAATGCTCCGAGATTGAGCCCGATAATGATCATGTGATGGTAAGCTACTCGGACACGAACAGAGGCGTTAACAGTGCAGCTACTTTCCAGTGCGAAGATGGATATGTGGCAAACCGCGAAGTTATCAAAACCTGCTCTCTAAGTGGTTGGTCGATTGGAGACGGAAAACCAGAGTGCAAAGACAATTCACAAGAGGTTGTTAACGTAACATCAACCCACAAACCATTCCAAACATTCCAGCCAGGAACAAGAGTGGTTAACTATTATTTTACTGACTCATCTGGAAATGAAAATACATGCACATTTAACGTTACCGTTGAAGTTCATactctcttcaacctgagcattaatgacatcgggaatgaccttggccccagcatcaaacgtaccctctacgtggatgacttcaccatcttctactcctcccctagcttttctattgttgaaaataggcttcaaaccagcctcaatcagctgcaagtgtggagcaacaataacggttttagattctccaaagacaagacagtctgcatgcacttttgtcatttcaacaacctccaccccaacccgaactttgtgctcaatgggaatcgcatccctaaagttgaaaacacaaagttccttggtctaactctagaccccaagctcacctacaagccacacatcaccaacctgaaactaaaatgcaatagctccctcaacatcctccgactgctctccaacactacttggggagcgaaccgctatgctctcctcaaaattttcaggctcaccattcgtgccaagcttgactatggcaatattgtttactgtgtcgctcacaactcatacctcaaccacattaacaccatccaaaatgaagccctcaggctttgtctaggagcctacaggacctccccaatcactagccttcatgttgaagccaacgaacccccctttctacttagatgtaaaaagcttagcctctcctatgcttttagagtcctcaccaacacccagaaccctgtttacaacctcattaggtaccccaatttctcctccctctttaataggactaaaaccctatcgccccccttcagcttacgcattaaatcagacctctttcaacttggcatcaaccccgccactctcggcacctattcctggcccacttttccgccttgggccaccccccttccttctgtccacctagacctctccacttataacaaaactcaaactcaccctaatctcttcatcaatctccacaaccaaatcaaagaccaactctcaaattacacctccatctatactgatggctccaaggaaggcaacaagacagctgctgctgccatcatccaagacatcaccctcagtagcagacttcctgaccactcatccatcttttcagccgaggctaaggccattctcctcgccctcaactttattgagtactctcctcttagtcactttgccattttctctgactcaaaggctgttcttacttcattactcaatcttaaatgggataacctcacctgccacctcctcctccggaaactcttttctcccaccctctgcaggaaaagtgttcttttcttctggatacccagccatgttggcatccctggcaatgacagggctgatacagccgctaagcttgcccttaacctcctcccttccccttttcccaaaaccctctctgacatcaaaccgcttatcgcttctcttgttcgtgaccgctggcaaaccttatggaacttccaaattgataacaaactccatgttatccagcccacaatcccgatcaaatccaccatcaacaacctttctcgtatcgacaacgttcatattacccgtcttagaattggtcacacccacctcactcactcccacctccttattggttccccccaacccctctgtaacaattgccactgcatccttacaatccaacacgttctccttgcttgccccctgtacaaccttcccagagcttctctcgctccccacaactcaattgctgagttcttccaaaaaaatcctccagataaaatagtctccttccttcagcatgcatccctctacaaccatatttaa

Transcript

Chiridota_g27215

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00075	RNase_H	RNase H	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00084	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF02494	HYR	HYR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000436	Domain	Sushi/SCR/CCP domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR003410	Domain	HYR domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR035976	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33332	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-