Gene detail

Detailed information of Chiridota_g28152 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g28152	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	chr_16	20194456	20211688	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g28152

ATGTGTCTACAGCTGAACGAGTTTGATATTTTGGAAGAGGTTGGTCGTGGAAAGTACGGAACATGCAGGAAAGTACGAAGGAAAAACAATGAAGAGGTATTTCTATCGAAAAAAGTCTCCATAAATCCCGTTGATGCTAAAACAAGAGACAGAATGCTTGCAGAAGTTCGTTTCTTACGGGAGCTTGAACATGAGAACATTACAACACTCCACGAAGTGTTCATCGACCACGTGACACACCACCTGTTCATGTTAATGGAATACTGTTCAAACGGGGATCTGAAGAATCTAATTGATATTCACAAGAGTGAAAGACTAATCTACTTTGAAGAACAGTTTATTTGGAAGATACTGCACCAGCTCTCCGCTGCTCTTAGTAAATGTCACGTGAGGGGCGACGGTCGATGCATTATTCATCGCGACATAAAACCAGCGAATATCATGTTTGATTCCAAATGGAATGCTAAGCTTGGCGATTTTGGCATAGCTCGAGAAGTTCGTGAAAAACGTTTCACAAATATTCAAAGTTTGGCAGAACCAAATGTTAAACCTGATTTGTTAACGGCTCGGATGGGCACATCATTATACATGGCTCCAgccatatctgactgtggtaatgactcaaagcgtttgttcaatactgtatcaggtctgttaggtaagacatccggcaaccagtttccagaagactgtgattcgaacttactcgcaaataatttcgcggacttttttcattcgaaaattgtaaaaatccgacaggaattaaaggaatttccatcatattcagctccgtttcgcacttgtcctcgtttttgtgcattttcacctgtgtcggaaaccaccgtacgaaatgttatgagatcttctaaaccaaccacggctgagattgatccgtgtccttcgtcttggattaaagacaacttggatacgtttgtgcctctcatgactcgtatagtcaatctttcatttacttctggcgtgttcggagcatcttggaaaaaggcagttgtcctccctcttcttaaaaagcaaggtctggatcttatccccgctaattatcgacccatatccaatctcacatatgtgtcaaaggtagtggaaaaatgcgcacttctacagttcaatgatcatctctcaaatggtgaccttctaccgtcatatcaaagtgcttaccgcagcaattatagtacagaggcggcacttataaaaatacattgtgacatattggcagccatggaaaatcaaaaagttatagcacttgttggtctcgatatgtccgcggcatttgacaccgtcgaccacgccattctcttgaagactttaagcaacatgtatggagtacaggatgacgcactggcgtggttccaaagctatctgtctaacagatcattttatgtttctgttcaggatgcttcttctgattacaagaacacaaacttctctgtaccccaaggctcaattcttgggccagtgttgtattccacttatgccagcccgttaggtggtgtaatttatgcctttgacatcaatgtcatgggatatgctgacgaccatgctctctataaagcatttacacccaaaggagaatttgaaagagatgccattttaaacctggaaagttgcctatctgaagttcactcttggatgaattcaaacaaattaaaactcaaccctcgtaaaacagagtttatcttgtttggtagcaaacaccaactacaaaagtgcaactcccattccatggtggtgagtggtatcgaagtaaaaaaatctacctcaatcaaatatcttggagtttactgggatgaatcactgtcatttcgccaacagattaaggctaaatgtaaaactgcactcttcaatctcagtaggatcaggagcataaggaagtacttgacaattgatatttgccaaacacttgcctcatctctggttttacctcacctcgactattcaaacaccttgtactatgatcttcctgattgtgatataaaacagttgcaacgggtccagaacatgactgccaagatggttctaggtagaggaaagtttgatagtgctactgactctcttcgctcccttcactggttaccaataaaatcccgaataacatatagaattgcaacatatgtctacaaatgtcttcataatctggttccttcatatcttaaagaattcatcattatacgtacaggtcgaagaggtttacgctcttcatttaacaccatgggcattctcctcgacattcctctcacaaaacgcagaacagttaaagacaggtcgtttgctgtagctgcccctgtcacatggaatagtttgccgtcttctcttcgttgcatcaataactacgataatttcaaacgggaactaaaaactgttttgttcacccaggcttttttataa

Transcript

Chiridota_g28152

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33332	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-