Gene detail

Detailed information of Chiridota_g30419 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g30419	PLASMINOGEN-RELATED	chr_18	2656942	2690363	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g30419

ATGTCTGGCGATGAGTGGTTGTTTGAGTGCATAATGATGTATACTTTTGGGTCATGGAGTTATTCCACTGTGGAACAAAGGTTGCGTTGGTATGCGCTATTTACCAATGAATACCAAATATGGATTATGAATCGCAGGGCTTCTCCAGAATGCTATACAGATCGCAGGGGCACTGACTACCGAGGCTTTGTCACCCAAACACAGACAGGGATTAAATGTCAGCGATGGACGGATCAGTTTCCACATGCGCATCAGTACACTCCAACTGACTACCCGGGCATGGGACTTGGCAAACATGCTTTCTGTCGAAACATTGGTGGTATTCAGGAAGGGCCCTGGTGTCTCACAACCGATCCAGATGTCCCTTGGGAGCTGTGTGGTGTCATGCCCCCTCAGAGTCATTGTTTGTCTTCTGTAGAAGACTCAGCAGATACAGAGGAGACTTCATCCAGTTATCTGAAAATAAAGAATGCAGCACTTCCTGGTTTCAACAGAAGAATTGTCGTTGACGTCAGCGCATCACGTTGTGCGACTCTTTGTTCCATGGAGATTGACTTCACCTGCAGATCGTTTGATCATGCGCGAGCTAAGAACATTTGCTGGCTAAGTGATCAGAATTCTCACGCAGTGGAACTTTCAAAGGAATTTGCTGGAAATCCATATGATTACTATGAGAGGCTTGACATAGGTCCGACTGGTCAATTCACGGTGACATTCAACAGAGCGATACCAGGAGACAATACTGCTGCCTTTTTCGCTGTCTCTCTTCAGGAATGCGCCCGTAAATGTCTCATGGCCAGTTTTGGGTGCGCCTCCTTTGACTACAGTCGGAATGGAAGGCTGTGCTGGCTTTCATCTGCGGAAGAGAGCGAAAAGGACCTGGCTCAGTTTGAGGGCAATCCCTACGATCATTTTGATAGGATTGGCCCAGCTCAAGCCGATTGTTTTGTTGGCACTGGAGTTAACTACAGAGGTTTTGTCGCCGTGACGATCACTGGCATTGGCTGTACCAGCTGGACGGAGGCAGCAAATTATGGTGTTGGTGCTACTGCTTCCGTTTACCCAGACAGAGATCTTGGTGACCACAATTACTGCAGAAACCCAGATGAAGACAGACAACCTTGGTGTTACCATGGTAGCCAGGAGGCTGCGGTGTCTAACTGGGACTATTGTGACATCACTGAATGTCAGGAAGAAATACAATTGCAGACATCCACCACAGAGGCAACTCCACCGGGGATACAACTCCTCTCTGAGGGGATGTACACCGCCCAGAGCTCAACGCTGGTCAAAAAGGGAGTACGGCTCACGTCGGATAAAGCAGTGGATGGTAATGTAAAGCCAAGACTCAACGCAGGAAGCTGTTCTTCAACAACTAGAGAAGAATATGCATGGTGGTATGTGGACCTGGGTGAAGTGTACACTATTGAATATGTTGACATCGTTTTCCCAAAGGGTGAAGCTGAACGTTTACGCAAAACAGAAATTTCGGTTGGAACACACCTGTCTGATTTGTCCTCGTACCAGACATGCTACCTTATTAAAAAGTCTGATACGATCCGAGCTGCGGAAACTCCCAACCAGCCACTGCATATCGAGTGTAAGACATTACTGGCTGGCCAATACGTCCGTTTTGATCTTACTAGGAGAGACTTCCTAAGATTATGTGAGgtcagcgtttggggatatgccgGAAGTGAACATATCGCTTGTGGAGTTGGGGAATTCCAGTGTTCAGAACAGTTCCAGTGCATACCGGAATCATTTGTTTGCGACGGTGAAAATGACTGCTTCGACCACACAGACGAACACGAGGactgctCGTTCCCCTTGGACGACTTTAGAGAGTTTGACAACAAGATCTTGATCAAAGTGGAGCCACAGGCAAGCTACATGAACCAACTCCAAGAGGACTGTGCCCGGCTGTGCGTCACGCAGATGTCTTTTGTTTGCCGATCATTTGAATACGAGATGACACATCAAGTCTGCAACTTATACAACACTACCCGGGCTCAGACGGGTGGTTTTTCTCAGTTTGTGGGGATCACACATTATGAGAGAATTTCTCAGACACGTGAGGCAGTTTTTGTGTTTATATGA

Transcript

Chiridota_g30419

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00024	PAN_1	PAN domain	Domain	Interproscan
PF00051	Kringle	Kringle domain	Domain	Interproscan
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF00754	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000001	Domain	Kringle	Interproscan
IPR000421	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR003609	Domain	PAN/Apple domain	Interproscan
IPR006585	Domain	Fucolectin tachylectin-4 pentraxin-1	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR013806	Homologous_superfamily	Kringle-like fold	Interproscan
IPR018056	Conserved_site	Kringle, conserved site	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR038178	Homologous_superfamily	Kringle superfamily	Interproscan
IPR050759	Family	Serine proteases and regulators with kringle domains	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24261	PLASMINOGEN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-