Gene detail

Detailed information of Chiridota_g3197 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g3197	B9 DOMAIN-CONTAINING	chr_2	53454456	53473082	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g3197

ATGGCTGAGGTTCATGTTATTGGAGAAGTTGTTGGTGCAAGTGGATTTCCTAGTCAAAGCCTTTTCTGCAAGTGGGGAATTCATACAGGTGGTGGATGGAAGGTGATAGCAGGGGCAAGAGAGGGCCAAACCCAAGTGGACAATCCCCAGAATGAAGAGTTTGCTGTGTGGAATCATCCTGTTGATATCCACTTTGCTACGAAAGGGTTGCAAGGTTGGCCAAAATTGAAATTTGAGGTCTATCACATGGATGACTACGGACGTCATGAACTTTATGGATATGGTTTTTGTCATTTACCAACTGCACCGGGAACACATAACATTGAATGTACCACATGGCGCCCCTCAGGAACATATCGTGAACAGATAGCGCAGTATTTTATTGGTGGCGCCTCACAGTTAAGAAATGTTGATATGGTACATAGTGCAGAAAGATACACTCTTCAGACAGTTTCTATGGGAAAGAATGCTAAGGAAACTTACATCAGGATCAGTACTCTTGCCTGCCTGCTGCAGAATGCTTCTCGATTTCAACCCCACATCACAGGAAAGGTGGGAGCCCATCTGTCAGggcaacttttaaacttgacaaagaatatggaggagagcacattggttcgtgtcatatgtcatgacatggcccggtttcaaCACACAGTACATCTAACCAGCATGGAAGAGTATAGAACAGGAGGTGTGACAACCTTTTTGCGGCAAAAAGCAGGATTGGGGAAGAAAACAGAAACCAGTAATTCACAGCTATTTGAATTGTTTGTGCCAAAAACTTCCAACCATCCAATCACAGAAGCTCCTAGCACAAACGTAGGAGGTACCCATAAAGATTCTTCACAACTATTAAAAGGAGAAAGGCAAAAAGGAAGTGATGCTAGGAAATCATCAAAAGTTGTTCCTCAAAAACAATCATATGCAAGAAAATATGAAGAAGAGGAGCAAGAGATAGATGCCATCCTTCAGGATGACTCGGATGAAGAAGTCAAACAAACTGAGGAAGTACCAGATCAGGAGACAGGAAAAAGGAAGAAAACTAAGTCTGATGCTCAAGATAGAAATAGGAGAACTGTGTTTGTAGGCAACGTCCCAAAGGAATACACTAGTGCTCAAATTAAAAGTTTCTTCAAGAGTTGTGGAGAAATTGAGACAGTACGGATCAGATCTGTGGCACCTTCAAGAGATGATCTTCCAAAACAAGTTATTGGTAAAACAAAAGACATTCATCCACAACGAAACTCCTTTAATGCTTACATTGTATTTGAGTCAGAAGGGTCAGTGTCAGAAGCCCTGCAGAGGAATGGTGAAATACTTGGAGGGAATCATCTGAGGGTTGATACAACATCAAATGAAAAGAAGCAATATGCATCAAAGAAGTCTGTGTTTGTTGGCAACTTGCCATTTGATATCGAAGAAGAAGCTATCAGGCAGTTCATGGTGGATTGTGGCAATGTTGAGGCCATAAGGTTGATACGAGACAAGCACACAGGACTTGGAAAAGGATGTGGCTTCGTAATGTTTGAGGATCCTGCATCTGTTCATCTGGCTCTCAAGTTGGATTCACAGAGGTTTGAAGGCAGGAAGATCAGAGTATCTCAGGTCATGAATCAAGAGAAACTCAACCAACAGCACGGACAGAAAAATAAATCCTTTCAAAGAAACCCCAACTCTGGATTTGATAAAGGAAATGAGACAGCCAAGAAGCCGCCGTCACAAAAAACGATGAAGAAAATTAAGAAGCAGCGTCACAAACATAGGAACAAAATGGACTCAAAGACAGCATTTACCGGTCCTCCAAGTGTCAGAAGTCAATCTAAAAAGTTTGACGAACCTTTTCCAAGGAGTAAACTTCCCAAACAACAAAcgagtgaaaggaactctgggaagtctacatttccgagtgaaaggaactctgggaagtctacatttccgagtgaaaggaactctgggaagtctacgtttcAAGAACCTTATAAGAGGAAGTTTCCTGCAGCTGCTTCAAAGTTCAACTCTAATGTTCAGTTTACTGGGAAAAAGATCAAATTTGACAACTGA

Transcript

Chiridota_g3197

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF07162	B9-C2	Ciliary basal body-associated, B9 protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR010796	Family	B9-type C2 domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034221	Domain	RBM34, RNA recognition motif 2	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12968	B9 DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0036038	Cellular Component	MKS complex	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-