Gene detail

Detailed information of Chiridota_g5271 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g5271	METALLOPROTEASE TLDD	chr_3	30073388	30092528	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g5271

atggtaaaaatccagaaactgaggagcaacattcagcagtggcagcagctaaaacagcgccTAGTCAACCCCTTTGCCCCTTCCGAAAATCTCGCATTTCTATGCTCAAATAGTGCTGGCGGCACTGATGTACctcttcatcatcttcacaaccaaatcaaagaccaactctcaaattacaccttcatctatactgatggctccaaggaaggcaacaagaccgctgatgctgccgtcatccaagacatcaccctcagtagcagacttcccgactactcatccatcttttcagccgaggcaaaggccattctcctcgccctcaagtttattgacctggatatcaacatgacgatgcgaaagaagacagatgtcgtcagcaaagtccacgtcttcaagcaaggtgttcaatggctatatgatacctttcctgtcggattgcaccacatttgtcatgatctaGTAAAGATGTGGTCACTGCATGACTTCCCCTTGCGTAATCCTGCTTGTTCTGGTCTTAAGTTTTGTGTCGATGTTAGTATGatcaagaagatgtttattgaagatcttgttggtcagtcatgtcgTATTCTATTTACTCAACATGgactaaaaccctatcgcctcccttcagcttatgcattaaatcagacctctttcaatttcgcatcaaccccgcccggcacctattcctggcccacttttccgccttgggccaccccccttccttctgtccacctagacctctccacttataacaaaactcaaactcaccctaatctcttcatcaatctccacaaccaaatcaaaaaccaactctcaaattacacctccatctatactgatggctccaaggaaggcaacaagacagctgctgctgccatcatccaagacatcaccctcagtagcagacttcctgaccactcatccatcttttcagccgaggctaaggccattctcctcgcccttaactttattgagtactctcctcttagtcactttgccattttctctgactcaaaggctgttcttacttcattactcaatcttaaatgggataacctcacctgccacctcctcctccggaaactcttttctcccaccctctgcaggaaaagtgttctttttttctggatacccagccatgttggcatccctggcaatgacagggctgatacagccgctaagcttgcccttaacctcctcccttccccttttcccaaaaccctctctgacatcaaaccgcttatcgcttctcttgttcgtgaccgctggcaaaccttatggaacttccaaattgataacaaactccatgttatccagcccacaatcccgatcaaatccaccatcaacaacctctctcgtatcgacaacgttcatattacccgtcttagaattggaagaggtggtttaaatttaggacatattggaataagggaagggcagaaattgaagggtggggatgcttggagtgagatctgtcaagatatagttgaaactctcctatggaagTCTATTATGTCCTATAATGGATCTGCCATTGTGGCAATGACAGGAAAGGACTGTGTTGCCATCGCTTCTGATCGCCGGTTTGGCATCCAAGCACAAACCGTATCAATGGAATGTCAGAAAATTTTTGAAATGGCGCCAAGGCTTTACATTGGCTTATCAGGACTAGCTACAGACGTACAAACAGTGTCAAACAGACTCAAATTTAGGCTCAATCTTTATACCTTAAAGGAGAATAGAGACATCAAACCTAAAACATTCATGAGTATGGTGGCAAATCTACTCTATGAAAGAAGGTTTGGTCCTTATTTCACCGAGCCAGTAATAGCAGGTTTAAATCCTAAGACATATGAACCTTTCATATGTAACCTTGACCTGATAGGCTGCCCCATGGTCACAGATGATTTTGTAGTAGCAGGTACATGCACAGAACAGCTGTATGGAATGTGTGAATCACTATGGAGTCCAAATTTGGAACCAGATGATCTGTTTGAAACAATCTCTCAAGCTCTTCTTAATGCCTTGGACAGAGATGCGGTCTCAGGTTGGGGAGTCATCGTGCACATCATTGAAAAGGACAAGGTGACAACAAAGACATTGAAAGCCAGGATGGACTGA

Transcript

Chiridota_g5271

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00075	RNase_H	RNase H	Domain	Interproscan
PF00227	Proteasome	Proteasome subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001353	Family	Proteasome, subunit alpha/beta	Interproscan
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR016050	Conserved_site	Proteasome beta-type subunit, conserved site	Interproscan
IPR023333	Family	Proteasome B-type subunit	Interproscan
IPR029055	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR033811	Family	Proteasome beta 3 subunit	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32194	METALLOPROTEASE TLDD	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0005839	Cellular Component	proteasome core complex	Interproscan
GO:0019774	Cellular Component	proteasome core complex, beta-subunit complex	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0051603	Biological Process	proteolysis involved in protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-