Gene detail

Detailed information of Chiridota_g5813 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g5813	UNCHARACTERIZED	chr_3	45255931	45327690	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g5813

ATGCGACTtggctatagaccctgccgccgtgtccataaccgaacgcagaatataactggcccggcagttgttgaccaatcagcaatcgggataatTGacgttcgtacgaacATCTGTGCTCCAACAAAGGTCATTTTGATGAAGAAATTTAAGGATCTAATCACCCGACAGGGGAGTGGTGCAAAGGAGGATAGAAGCCCTACAGATGAAGTTGCTCTTACTCCACCATCCAGTCCAGTGGAACCTGTTCAAAAAGCGGTTAAGGACGAAAGAGAATTTCCAAATGATCCGACAACAGAGGCAGACGTTATTTCCAGCATAGAGGAATTTTATTTTCGAGATGACACTTTTGACAGCAGTAAATATGAATTGGAGAAATTACCAGATCTACCTAAACTGAGCAGCATTGACGAAGACAGAAATCGATTACGAAGACAGTTACAGGCTGTCTCGAAGAAAGTATCTGATGTTGTTTTAGAAAATCAGACTTCATATAGTAAGGAATTGCACAGAGTCACAGAATTGCAAGCAAGTTTACAACAAGCAACCACTATATGCATTCACGGAAGGAGTGAATTGGAGTCCACCATGCAGGACTTTACTGTAGCAAGTCTGGGTATTATGGCCAATCACAGGAAGAGGCAATTATTACTAAGCCTGTTGAAGTCGCTCTCAACCATCAAGACGTTGCAAAGAACAGATATAAGGCTGTGTGAGATGCTTGAAGAAGAGGATTACCCTGGAGCCATTCAGCTCTGCTTGGAGTGCCAGAAGGCGGCAGGGACTTTCAGGCATTATAAGTGTATCAGTGAATTAAGTTCAAAACTTCAAGACACACTGGAAACAATTGAGGAAAGACTGGACCATGCTCTTGCCAAAACCTGCAATAACTTTGACATCAAGTACTATGAGAAATTACAAGCAGCTTACAAACTACTGGGCAAAACTGAGACTGCCATGGATCAACTTCACATGCATTTTACAGGCTCCATACAGAACACTGCATTCCAGATTGTTCTAGGTTATGTACAGCTTGTTACAGGGTCAACAGGTTCAAAATTTCAGAAATTGCAATACAAGGACCTTTGTGATCATATTACATTAGAAACCTATATTCCGTGTTTAGTGGATCTTTGCAAGGCATTATGGGAAGTGATGAAGAGCTACTACAAGACAATGGAGTGGCACAAGCAGGAGCAGTACAAAGAGGAGAGACAAGAAGAGAATGCAGAGTCAGGGACAGCTCTACAGAACTCCATTAACAGAAAGTACATCCAACAAAAACTGGAGCATGGTCTAACAAGGATCTGGCAGGATGTTCAACAAAAAGTGAAATTTTACCTGCATTCAACAGATATATCGAACATCAAATATGATGACTTCATTTATGTTTTAGACTTGGTAAATAGGTTGATTGAAGTAGGAAAAGAATTTTGTGGAAGCTCTTCAGAAGGTCTACACGATTCCATCCGACAACAGAGTTTAAATTATTTTAAGACATACCACAGCCTGCGAATGGAAGAGCTCCGGATGTTTTTGGAGAACGAAGGTTGGGAAGTGTGCCCCGTCAAATCAAACTTCACATACCTCAACCTCCATGAGTTTCAATTTTTACGTCCAGAGCCGTCGGGGGCCGGTCATGTGCATCTTGATAATCCTCAGTCTCCAACTCTACAAGGCGACAAGAATTTTTTCAGTAGATATACTTTGGAGGGTAGTCCTTTTGACAAGCAGAGACCGGGCGAAGGGGATGAAATAATGTTTTCCAGTGGATACATGGATGAAGGGATGGGGTTTGACGAGTCTGATGAAGAGGATGAGGTCTCAGAAGAACTGAAGCAAGAGTACATTGATGAAACGGGAGAAGCACCTCAGAGAAGAAATTCAAACAAGAAGAAAAACTTAGATACGCTGTACAGCAAAGGTCCAACGCTCGCCAACACTACCTTGAAAGTGCTGAGGCTGTACGGGAAGTATATGCAGATGATCTCTGTGCTGAAGCCAATTGCATTTGATGTGGTCACGTGCATGTCGCAGCTGTTCGACTATTACCTGTTTGCGGTTTATTCCTTCTTTGCATCAAACGTCAGCGATTCATCCGCCCTCGGCCTGAACAGCAAACTTTGGACGACTCTAAGGAGAATCAGCAATGACTTCAGCGGTCAGAACTTACAAAGTGGTGTTGTTCCACCTGGGACCACTGCTCCAGGGGAGAGAGTTGGGTTTCCACGGGTGTCGCCCATAGTCCAGCTTTCAGGCATTGAACATTTCAATGGATTGTCAGAGAGGATCGTTGGTACTGAATCACTAGTATTTCTGGCCCAGCAGTTTGAGACTCTTCAGCCGCACCTTGAAGCCGTCATTCCTACCAGTAAGAAACCATTCTTGCAACAATTCTACTCCCAGACTGTAAGCGTAGCATGTGAACTAAGGTGGCCCGTCTATCAAGGGGTAGCAACAAGGTCAATGAACTTGGAGAGGATACTACATCACATGGTCAATGTCAAGTGGGACATTAGGGACATCATGTCCCAGCACAGCTCCTACGTGGACCTAATGCTACAGGAGTTCCATGAATTCAACAAGAGGTTAGGAAATGTGAGCAAGAGGGTCCGGATTCCATCTGAGGCCTACAAGATTATTTGGGAGCATGTGATCAAGCTGGCCAATAGAACAATGGTAGAGGGATTTGCATCAGCCAAGAAGTGCAGTAATGAAGGCAGGGCTCTGATGCAGCTTGATTTCCAACAGTTTCTCCTCAAATTAGAAAGTCTCACTCGGCTCAGACCAATTCCTGACAAAGAGTTTGTGGAGCTTTACATCAAGGCGTACTACCTCAATGAGCATGACATGGAACAGTGGGTCAAAGAACACAAGacagctgctgctgccgtcatccaagacatcaccctcagtagcagacttcccgactactcatccatcttttcagctgaggctgaggccattcttctcgccctcaactttattgagtactctccgctcagccactttgccattttctctgactcaaaggctgttcttacttctttactcaatcttaaatcggataacctcacatgccacctcctcctccggaaattcctttcgcccaccctctgcagaaaaagtattcttttcttttggatacccagccatgttggcatccctggcaatgacagggctgatgcagccgctaagcttgccctcaatttcccactaccccatttcccaaaaccctttctgacatcaaaccgcttatcgcttccctttttcgtgaccgctggcaaaccttatgggactctcaaatcgataacaattccacgtcatccaggccaccattccgatcaaacccaccatcaacaacctctctcgtgtcgacaacgttcatattacctgtcttag

Transcript

Chiridota_g5813

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10474	Syndetin_C	Syndetin, C-terminal	Repeat	Interproscan
PF10475	Vps54_N	Vacuolar-sorting protein 54, of GARP complex	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR019514	Domain	Syndetin, C-terminal	Interproscan
IPR019515	Domain	Vacuolar protein sorting-associated protein 54, N-terminal	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR040047	Family	Syndetin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13258	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000149	Molecular Function	SNARE binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0032456	Biological Process	endocytic recycling	Interproscan
GO:0042147	Biological Process	retrograde transport, endosome to Golgi	Interproscan
GO:1990745	Cellular Component	EARP complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-