Gene detail

Detailed information of Chiridota_g6981 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g6981	CBF1 INTERACTING COREPRESSOR CIR	chr_3	80592230	80616678	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g6981

ATGGGCAAGTCGTACGCCAACTTTATGTGCAAGAAGTTTTTCCATCCCTCATCTTATGATAATATCAAACGAGTATGGATGGCACAACAGAGAACAGAAGCGGAGAAACAGAAGCAGGATAACCTCAGATCAGAATATGAAAGAGAGCAAGAAATATACGAGAACAGGCAATTGATGGGGGATGAAAAAGTGAAGCATGGACTCACTTTCATGTATGAGCCCCCAAAGGGGTACAAAACAGAGGACAAAGTGTCACAAAAAGATGGAGAGCTAGAGTATAAGTTTGAATGGCAGCGTAGCGCACCAAGGGAGGCGTATGCCAAGAACATGGAGATTACCGATCAACCATTTGGTATCGCTGTTCGGAAGGTCAAGTGCATTAAGTGTCACCAGTGGGGACATGTCAACACAGACAGAGAGTGCCCTCAGTTCAACAGCAAGGGTGAATCAGTTGAAGGACCAAGCACTAACAAGTCAGAGCTCATAGATGACATGAGGAAAGATGGATATGCTCTAAAGCAGAATGTGCTGGACAGGAGGGTGGACAGATCAGCTAAAAATCAGCAAATAATTGAAAGTGAGGAGGAGGAGGAAATTCCTGAAGAAGCGTTCCTTAAATCCCTGTCCAAGAAAGAGAAGAAGAAGCTACTCAAGAAATTAAACGAGATGGAACAACAAAATCGACAGAAACCAACAAAGAAGAAAAGGAAACAAAAGCATCAAGATTCTTCAGATGATGAATCAGATGATGAGaaagacaacaagacgagacggaaacaaaaaaaagaaaagaagagGAGGAAACATCTTTCTTCCGAAGAGGAAGAAGACTCGTCAGCTCGAAGAAAACAAAAGATGAAGAGTAAAAGACACAAATCATCAGATGAAGAGGTGAAGATGGAGCGGAGGAAAGAAAGAAAGAGGAGACAGGATTCTTCGGACGAGGGTGAAGACGCAGCAGATGGAAAGAGAAGGAGCAAACAGAAGATAGGAAAGAACAGAAGACACGATTTCTCCGATGAGGAATCGGAGGCAGCAGGGGCAAGTGAGAAGCGGCCAATGAAAAAGAGCAGATCACAGGAGTCAGATTCGGATTACCCTAAGAAAGAGAAGAGAAAAGAGAAACAAAGAGAGCAGGAGAGAAAATCAAAGAATAGGAGAAGGGAATCAGATTCTTCATCAAGTGACTCAGATAGTGAAAGCTCAGAAGGGGATGACAGAAAATTAAATCAAAGAAAGAGAAATGGTTATGATGGTGAAAGTCGAGATACAACAGATAAATATCAGAAACACCGATTGGATTCAGATATCAGGGACCAAAAATCTCACAGCCATAGGCAAAATGAGCATAGTGATACATATTCACGCAAGGACAAACATGAAATGAGAGACACTTATTATGAGAGAAAAAGTAGGAGAGATGAAGATAAACATTCTGAGAAACAAAAAAGGGATCGGAGCAGAAGCAAGGATAAATCTGACAGTGATACAAGGGAAAGGAATAGAGACGGAAGACAAAATGGACATGCTTCTTTTTCGTCTCTGAGAGACTCTTCTAAGAAATACTCAAGATATAGAGACAGTTCTTCATCAGATGATGTCCATAGCTCTCTGGCACTactcatcacagatatcgacatgccacacatcacagatatctacatgccactcatcacagatatcgacataccactcatcacagatatcgacatgccactcatcacagatatcgacataccactcatcacagatatcgacatgccactcatcacagatatcgacatgccactcatcacagatatcgacatgccactcatcacagatatcgacacgccactcatcacagatttagacataccacacatcacagatatcaacataccactcatcacagatatcggcatgccactcatcacagatataaacatgccactcatcacagatatagacatactacacatcacagatattgacataccactcatcacagatatcgacataccactcatcacagatatcgacatgccactcatcacagatatcgacatgccactcatcacagatatcgacacgccactcatcacagatatcgacacgccactcatcacagatttagacataccacacatcacagatatcaacataccactcatcacagatatcggcatgccactcatcacagatataaacatgccactcatcacagatatagacatactacacatcacagatattgacataccactcatcacagatatcgacatgccactcatcacagatatcgacatgccactcatcacagatatcgacatgccactcatcacaaatattgacatgccactcatcacaaatatcgacatgccactcatcacagatatcgacatgccactcatcacagatatcgacatgccactcatcacagatatcgacataccacAAAACAACAtggaaaaatcctag

Transcript

Chiridota_g6981

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10197	Cir_N	N-terminal domain of CBF1 interacting co-repressor CIR	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009056	Domain	Cytochrome c-like domain	Interproscan
IPR019339	Domain	CBF1-interacting co-repressor CIR, N-terminal domain	Interproscan
IPR040014	Family	Corepressor interacting with RBPJ 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13151	CBF1 INTERACTING COREPRESSOR CIR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0009055	Molecular Function	electron transfer activity	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-