Detailed information of Clavulariidae_g23071 in Trachythela sp. YZ-2020 Gene info
Gene IDAnnotationContigStartEndStrand
Clavulariidae_g23071DNA REPAIR/RNA PROCESSING CPSF FAMILYctg00053936839323742313-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DDB1

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00038FilamentIntermediate filament proteinCoiled-coilInterproscan
PF00932LTDLamin Tail DomainDomainInterproscan
PF03178CPSF_ACPSF A subunit regionRepeatInterproscan
PF10433MMS1_NMono-functional DNA-alkylating methyl methanesulfonate N-termRepeatInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001322DomainLamin tail domainInterproscan
IPR004871DomainCleavage/polyadenylation specificity factor, A subunit, C-terminalInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR018846DomainCleavage/polyadenylation specificity factor, A subunit, N-terminalInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR036415Homologous_superfamilyLamin tail domain superfamilyInterproscan
IPR039008DomainIntermediate filament, rod domainInterproscan
IPR050358FamilyRSE1/DDB1/CFT1/CPSF1Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR10644DNA REPAIR/RNA PROCESSING CPSF FAMILYInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0035861Cellular Componentsite of double-strand breakInterproscan
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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