Gene detail

Detailed information of CsqKR_Scaf10_9.5 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf10_9.5	ACONITATE HYDRATASE B	chr15	28917819	28929317	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf10_9.5

TTTGTTTCTCAGAGGTTGAATTGCAGAGCTGTGACGTCATTAGTCAGGGACGAAGCATGTTGTACTTCATGAGATTCGCTGCCAAGAAGGGCAGTAACTTCATATCATTATGCAGCCAAGCACGACAGCTCCACTTTGCACCTATAGCTGCTCAAAAGGTGGCTATGAGTCGTTTGGAACCAGACACAGAACTGAATTATGACCAACTTGAAAGAAACTATAACATTGTCAAGGACAGACTGGGACGTCCACTGACATTGTCCGAAAAGATTTTGTACAGTCATTTAGATGATCCTAAAAATCAGGAAATTGTCCGTGGCGAGAGTTACTTGAAACTCAGACCTGACAGAGTGGCAATGCAAGACGCCACAGCTCAGATGGCCTTGCTGCAGTTCATTTCAAGTGGCCTCGCCCGCGTTTCTGTCCCCTCCACCGTCCACTGTGATCACCTCATCGAGGCCCAGGTCGGAGGCCCCAGGGATCTGGCCAGAGCCAAGGAAGTTAACAAAGAGGTGTATGAGTTCTTGGCATCTGCTTGTGCTAGGTATGGAGTTGGCTTTTGGCAGCCAGGCAGTGGTATCATTCATCAGATTGTTTTAGAAAATTACAGCTACCCAGGAGTACTTCTCATTGGAACAGACAGTCACACACCCAATGGAGGTGGTCTTGGTGGAGTGTGTATTGGTGTTGGTGGTGCTGATGCTGTTGATGTAATGGCCGACATCCCATGGGAACTGAAATGTCCAAAAGTGATAGGTGTAAAGTTGACAGGGTCACTAAGTGGCTGGACATCACCAAAAGATGTCATCCTCAAAGTTGCTGGAATTCTCACTGTGAAGGGTGGCACTGGTGCCATTGTGGAATATTTTGGACCTGGAGTCGAATCAATTTCCTGCACAGGTATGGGAACAATCTGCAACATGGGTGCAGAAATTGGGGCCACAACTTCAATCTTCCCGTACAACCACCGCATGGCGGATTATCTTAAAGCAACCAACCGAGGAGATATTGCTGAGGTGGCAGACAAGTACAAGCATCTGCTGTCATCAGATCCAGACGCTGAGTACGACCAAGTGGTTGAGATCAATCTGAATGAGCTGGAACCTCACGTGAACGGACCCTTCACACCTGACCTCGCCCACCCCATCTCATCCCTGGGAGAAACTGCAAAGAAAAACAACTGGCCACTTGAAATCAAAGTTGGTCTGATCGGCAGCTGCACTAACAGCAGCTACGAGGACATGAGCAGGTCGGCGAGTATTGCACGCCAGGCTCTGGAGCGAGGCTTGAAGGCAAAGAGTAAATTTACAATCACACCTGGGTCTGAGCAGATCAGAGCAACCATAGAACGAGATGGACAGGCTAAAACCCTAGCTGAGATTGGAGGTCTGGTTCTGGCCAACGCATGTGGACCATGCATCGGTCAGTGGGACCGCAAGGATGTGAAGAAAGGCGAGAAAAACACCATCGTAACATCATACAACCGCAACTTCACTGGACGTAACGACGCCAACCCTGCCACTCATGCCTTTGTCACGTCACCCTGAGTTGGTGACAGCAATGGTGATTTCTGGCAAACTTGACTTCAACCCAATGACAGATGAACTGACGGCAGCTGATGGTAGTAAATTCAAATTCGAATGTCCTAATGGTGATGAACTTCCCTCAAAAGGATTTGATCCTGGAAGTGTCACGTACCAGGCCCCACCCGAAGACACTAGTCAAATCAATGTTATTGTTTCACCTGAGAGCAGACGACTGCAGCTACTCACACCTTTCGACAAATGGGATGGCAAAGATCTTGTAGACATGCCGATATTAATAAAGGTAAAAGGTAAATGTACAACAGATCACATAAGTGCTGCTGGTCAGTGGTTGAAGTACAGAGGTCATCTTGACAACATCTCTAACAACTTACTTATTGGGGCTGTGAACTCAGAGAATGGAGAGATAAACTGTGTAATAAATCAGATTACTGGGGAGTACGGCACTGTGCCTGACACTGCCAGGTTCTACAAGTCCAAGAAGATCCCCTGGGTGGTGGTAGGAGATGAGAACTACGGGGAGTAATAGTCAGTGAGATTTCATCAGCACTTGAATTCAACATCTCGGAGGCAGAGCTGTCATTGTGAAGAGCTTTGCCAGGATTCACGAAACTAATTTGAAAAAGCAAGGAATGCTTCCTCTGACATTTGCCAACCCATCAGACTACGACTTGATACAACCCTCAGACAGAATCTCACTCACTGGACTCGATAGCCTAGCACCAGAAAAGCCAGTTACCTGTCAGGTGAAACATAAAAATGGTTCGGTAGACCGGATCCAGCTGAACCACACGTTGAACAAAGGACAGATTGAATGGTTCCAGGCAGGGAGTGCTCTGAACAGAATGGCCGAACTGAAGAAGTGAAAACAGCACACGAAACTTTAGAATGTTGTGTGATTAAATTATGTGCAGATTTTGTTGATGAACCACAAAAATGTTTGCTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGATTTTTTTTAAGAGAAGAAAAAACAAAAAACAAATTGTGATAGACTTAACCATATTTTATACAGTTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00330	Aconitase	Aconitase family (aconitate hydratase)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001030	Domain	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain	Interproscan
IPR006248	Family	Aconitase, mitochondrial-like	Interproscan
IPR015931	Homologous_superfamily	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3	Interproscan
IPR015932	Homologous_superfamily	Aconitase, domain 2	Interproscan
IPR018136	Binding_site	Aconitase family, 4Fe-4S cluster binding site	Interproscan
IPR036008	Homologous_superfamily	Aconitase, iron-sulfur domain	Interproscan
IPR050926	Family	Aconitase/IPM Isomerase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43160	ACONITATE HYDRATASE B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003994	Molecular Function	aconitate hydratase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf10_9.5 global RNA-seq network