Gene detail

Detailed information of CsqKR_Scaf12_63.35 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf12_63.35	RETINOBLASTOMA-BINDING PROTEIN 6	chr15	20109870	20113435	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf12_63.35

TTTGCGTGTTTTAACGTGATTACAATTGTGCTGTGAATGCATGGTGCGCGTTTGTAAATTGTTGAAGTCAACAAAGGTGTAATGTAGTTTTGTAATTTTGAAATTTTGTACGGAGTTTCCTTTCACCGCTGAAGACCTCACATCTTTTCTGAGACAAATCACCTACATACTGGTAGAACTGCTGACATGTAGATGCTGTTTGAAACCTTTGTCACTCGTGGAAACATTTTTATTTGATATTTAAGACGCCATTTTGGAATATTTACAAGACCTACATACGTGGAATTGTATTCTACATTTCGACCTTTAAAACTTTAATAGTGTTTTAATATGTCTTGTATATTCAATTAATTGTTTTATCCATAAAATGATGTTATCTAAATATGACTGTTATTTTTGTAATCTTCTGAAAAACATCAGTTCATGTTCAATATTTTGAATAGATTTTGTTTGCAAGAAAAGAAAGTGTTTCAGTACAGTCACAATGTCGTGTGTTCATTATAAGTTCAAAAGTAGCCTAGACTATCAAACAGTTACATTTGATGGACTCCATATTTCACTTGGAGATCTGAAGAAAGCTATAAGTCAACATAAGAAGTTGAAGCCTGGAGAATACAACCTGGAAATAACAAATGCCCAGACTAGAGAAGTGTATGTTAACAACAGTGAGCTGATCCCTAGAAACTCTTCTGTGATTGTATCAAGAATTCCAATTCAGACAAACACCTCAAACAGTACAAGCAAGGCATGGGAGGCTTTCAAGCAAGAATGTGCCAAAGCAGTACGTGTCTTTTACTTGTTTATTTGGTAACATTTTCATTCTTTGTTGTTGGCATTTTTATTTTTCTTTATCTTTTTACCAAGTCATCCTTAAGGTAAGTGTTTCTAATCTTGATAAAAATGCAGATTACCATATTTTATGACTTAAATTTCTTTAATGTATTTGAAATATTTTTTGTATATAAGATTGTATTGTAAGTAAATGATTATGCCAGAGCCTCAATAATGTATTCTGTAAAATTTGGGTAAGTAACACATTACTGATCTATCTTACAAATAAATGTATAGTATCAAATAATATTTAATAAGTTCATTGTATTGTGTACTTAAAATGAACTGATGTCACATAACATTGTCATAAGCATGTTTACATAATGTTATGAATTTCTGAACAACATTGTTGATAAAATGAAATGATAAATTAATATTTCATATTAACCAAGCAACTCTGGAAACAAAACATGCCATTACTGTGTGTATAAAAATGGGCATAAATTAGCTGGAAGAAAAATGTTAACTACAATCTTTAATTATATTAATATTTAAATGGGTTCTATGCAGTTTAGATACCCTGTTAATGTGTATTTCAGTTCATGGGACATGTTTTGAAAAGTTATAAAATTGCCATATTAAGAACTGCTTAAAGGTCAGTGTAAAGTTTTAAGAAAATGTAAAGACATATGATATTTGTTGTTTTAAAAAACAAATAAATTATAACTGTTCTGGTAATGATATTTTGAATCCTAAGTTGCTTGACATTTTACTTGGCCCAGATGTTGGTGGCCTACAGAAAATATCTAATATACTATTCATAATATGTGATGCAGATTATTAATTAATGATAGAATATATATATAGAAAGAGATAACTTTATATGCTTACTTGTGTACCAGGTATATCATTTGTGTTTGAATATAATAATGAAAACAGTCTGTTGTAATTTTATCAGTGGTCATATTGTTTTTGTGTAACACATCATTTATTTTATTACATTGAAATGTTTAGTTTATATGTAAATTGTTATTTTTAATTATATTATTTGTACAGTTATTATAAACAAAATTGTTAAAATTTGAAACTTGTAATATATAGGATAATTTATTTTTAAAAGGTACGTAACCACATTATTTTACATTATTATGCAGTATGGTTGCTTGTTTTCATTACATTGTTATATGACTGTTAATCAAGTCACAATGCTAAGTTTTGATATTATATTTACATTTGCCTTGAATAACTTGCTAGATGTGTATGTGCGAAAAGCATTTTTAGAGCTATTACAATCATAATAGAAATTTCATCAAAAACAACTGAATCATTTCAAAATAAAGATAATAATATTACTACTACTAATAATAATAACTATTATTATTATTAAAAGCTAATGTCATTTCTATAAGATTACGAACACAAAAACAGAATAAA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD\|DWNN

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08783	DWNN	DWNN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014891	Domain	DWNN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15439	RETINOBLASTOMA-BINDING PROTEIN 6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf12_63.35 global RNA-seq network