Gene detail

Detailed information of CsqKR_Scaf98_32.32 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf98_32.32	DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED	chr7	36645248	36664827	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf98_32.32

ATGTATGACAGTTTTGATATTGATGATTATGACTTTGAGGAGGAACAGCAGCCTCCTCACAAAAAGGAGTGGTATCAGTTGCGAAAGCCTGTTTGTCCATACATCTGTTCTACCCCACTTGACTTTAACATTGAGCGAGATTTCCTTAACAAAAATGTCTACCCAAATATTGCTGAATTTGCTAAAAACAGAGGCGTGGTCTTCTCCACCACTGACATCAGCTGGACTGCAGAGGACAAAGTGTTCTCTAGTGGTGAGCTGCTGCGCTTTCTACTAGACTCAATCAGCAAGTGCTCTCCATTCTTCATCTGTCTGCTTGGTGAATGCTATGGTCCCCACAGACAGGGCAAGTGGACGCCACTGCCCGAAAAGGTGACCACTGTCCCCGAGAACTGCGATCCTCTGGACAAGAACTTCATGTTTGCTGCCTCGGCAGGGTACAGCTGGGTTCTGCAGGAGTCTCACCAAGGCTGCAGCATCACTGAACTGGAAATCATCCACGCTGCCTTCCTTGCCGATGATGGTCACAGCTTCTTTTACTTCCGGCAGCCTGAGCATCTTGAGGAGAAATACTTGTTGTCAGAGGAACACGAAGTCGACAGACTGTACCATGAGGAAAATGAACATTCCGGTTTGAAGATTAAAGACCTCAGACAGAGAATTGTGAAGAAAGATTTACCTGTCAAGTACTTCTCAACTCTAGAACAGCTGGCCAACCTTGTCTTAAATGACTGGATTGACCTTATTGATCTGATGTACCCACCTCTAGTCAAACCTTTTAACTTCTTAGACAATGAAACATATCATGAATGGCTGATTCAGGAATCATTTGCTGAAAATCGTCGCAGTGTTTATGTGAGTTGTCCAGAGAATGAGAGCGTCATCCAGCAGCTGTCTGAGTTTGCCCTCACTTCACTGGACACCGTCTGCTCAGACTACATGTGTGAACAAACAAACAACAGATACAGACACTCCTCTTCAGTGTTTGGATATAATAGGCCGATGTTGGACAGCACCAAGTACAAGTCAGTACTGTGTTTGACTGGAGACCGAGGGGCAGGCAAGTCATCCATTATTGCCAAGTGGCTGCAAGAGTTTGATTATCTGAGTGCAGACGTCCCCCTCATCAGTCACTTCATCGGCTGCAGCTCTCACAGCACTGACATCTGTGTGTTCCTAGACAAGTGTGTGCAAGTGTTACGTCAACACTTTCTTAATCAGGATAACATGGAAGCAGACTTGGATCACTTACATGAATGCTGCAGTTTCGAGGACAAACCAAACAATTTTCGAGATCTTTGTGAAGCCTTTATAGCTGCTGTGTCATTGGGACCATGTGTCCTTGTGCTTGATGGAATAGATGAACTTTGTGGAAGTGTCAGCCTTTCCCCTCAAACTATAAAGGAGTTGAACTGGTTGGCTGGGTCTCTGCCTGCGCAGTGTAAGATAATAATGACTACCACGCGGTCAGACATCACCTACCGCAGTTTGTGTCGCAGACAGGACACAAAGTTCATCACAACCCCAGTGATCTCCAGTGAGGACAGGATGAGAGAGATTATCCACAGACACTCACAGCAGCACTTCCAGCATCTCACAGACAAACACTTGAGCACAATACATGAAATCAAACTGTCAGCCAAGCCACTCTTCCTTACCGCTCTGTCAAGTGAGATCCAGTGTTACAACGTGTACACAAATCTGGACAACTTCCTGCAGGACAATCTGGAAATCTCCTCTGTGAGAGAATTCTGGATGAAAAACCTCAAACGATGGGTCACGGAGTTCAGCTGGCTTGTGGACAGATCAGAATCATCAGTTGATGACAGCTCTGACACAGGGGAGTATTCTGGGTGGGTGGGGGATGCTTTATGTCTCTTACTGTTATCTCGTAGCGGGCTCACTGAGGATGAATTGTTACAGATGCTAATCAACCTCGGCTACAACGGCAGCCTCGAGGTCACGTCATTTGACTGGTACAAGTTCAGAATGTGTCTGGGGTCTGCACTGCACGAGAGAGTCGATGGCTTGATGTGTTTCTCCCATCACCACATCAAAGACATCATCCAGTACATACTGTTAAAAAGTCTGAAGGCAGCTCATGGTGATCTGATTTTGTCTCAGGACATCAACAGTCCATGGTATGAGTACAAACGCAAACTGCACCACATGCTTGCCTCCTTCTTCTCACAGCAGCCCTACAACCAGAGAAAGGTGGAAGAGTTACCATGGCAACTGATGATGGCAGGAAATACGAACAGTGTGTTAAAGATCGTTGAACATGTGGATTATTTTCTTGACCTGGCTGACAAAACTGGTCACTACCCATCTAACCGACGTGATCTGATGACCTACTGGGAGTTTCTAGAACATCACGGCATCAAGGCTGATGTGTCCTACATGAACATCTTTATGAAGATGGGTTTGCTGGAGTCAGACATCAGGCATTTAGAGTCAGCATCAGTGGTGAATAAGAATCTCTATGTGATTGAAGAGATGCCTTTAGAATCTGAAGAAGAGTCAGCTGATTCAAACATGTTTGGAAACCTGGACGACAGATTATTTATCTTTGAAGCTCCCACAGCTTTACACATTAAAGGTGACGGGAAGGTGCTGGAGGGGTGTGAGGGAGTTGGTCCTGTTAAAGATTTTGCTTGGCATGTTTCTCAGCTCCTCATTGAGATGGGTTACTGCGAAACAGCAGAGAAAATCCTCCACGCACTCATCCTGTTTCTTAAAAAGAACTTCCCCCTCACACATGACTGTCTTGTGGCATGCTGCAAGTCTCTTGAAGTTATTGCAAACATGTTTCACAGTCGCGGGGATGTTGCTGTTGCAGAGATGTTGTACAAGGAGGCACTCAGCATCGTCTCTGATTTGATGGACTTCAATGAGGAAATGTTAGAACGGCCAGAGTTACGTACCTTGAAAAGTCGTCTGCTTGGACATCATGGAAGTATTAGACTAGACAAGGGTGAAGTGACGGAGGCTGAGGAGTTACTGAAGGAAGCGCTTGATTTTGCTGACGAATCTGTGAATAACATCCCTCTTACAGCCACCATCTTGTACAATCTGGGATTACTCAGAGCGAAGCAGGGAGACACTGCGCGGGCGGAGTCCTGTTTGCGGCAGTCTCTCACTCTGAGAGAACAGTGGTTTGGTAAAACACACACACTCGTAGCAGACGTCCTGTCAGGCCTCGCTAAACTCCTGTCTGCTGATCACAAAGGCTGTGATAAGGTGCAGGCTGAACATCTGTATCGGAGGGTTATACAGATACGAGAAGATTGTCTGGGCAGCAAACATCTCCGTACAGCTGACACTCTGTTTTTATTAGGTTGTCTTATTGGTCAGCAAACAAGTTTGACAGCAAAGAATGAATCCATAAAACTCCTCAAACAAGCACTGGACATTACAACAAGTCATCTAGGAGTGTCAAACTGCCATACAAAGAAGATACAGAAGGCGCTGACAAACCAGGAAGTGATGTTGCGACTGGGAAACTACGAGTTCGGACATGCTAAGCCAATGGATATGAGAAGCAGGAACAACCCGTTCAGTACTCTGACTCTGCGAGACAAAGACTTGAAAAAACTTCAACCAAAAACTGCCTTAGAGAAACCCATTTACGAAGCGCTCAACATCCGCGCAGTCACTCGCGAGGAAATGCTGCATTACAGTCGACCGATCAGTTTCATCGGCAGCGCCAACAGCTTCCTGAGTGCATCAGAGAAGCTGTACACCGAGAGCGAGCGACTGCTGAGGAGAAACTCGATTGAGAGAAAACTGAAACTGGAGAGTTCTCCTCTGCCCCGCTCTCGCCTCACCGTGGACATGAACTTTGTGGCTGACTCCACGTCCGCTGGTGAAATGCACAAAGACATGATACTGGACACGTTTGCGGTGGACGCTGACATGGAGGTGCAGGAAAAACAGACTCCGCCCCAAAAAGCTGTCAAATCACGGATAAAGAGTCGACCTCAGAGCGACCCGTTCAAGACTTTCATCAGGTTTGCTAGCGCAAGCAGTGAACGTAGTCATATGTCGTCACGGCTGCCAGCTTCAGCCAAGAGTCGTAGCAAGTCGGCATCGTCCTCTACAGCACCACCATCATCATCATCAGCAGCAGCAAATGTGAGATGCCATGATATACGATGCACTGTACCATCTCCACATTCACTTCACACTATCAACCACCAGACAGTGGTCGGTCCTCACAGCACCGTGGCCAGTCTGCTGAACACAAAGTCTCAGAGTTCGAGAAACTCGAACCATCAGCATCACTCTGCCTGGTACCACGTCCCGGGACGATACTCAACTCCAGAAAAAGTTTATCCAGCAAAACGAAACCAGAGCAGACCTTCGTCAGTGGTTTCCACCCAGTCTCGCCAGTCGCGACCTAGGAGCATGTCAAGTCACTCCACCGTCATGTCTAGACAGAGCAGAAGTGATGTGAAGTTTGTACTGTCTGGACAGTGTGGTTAG

Transcript

CsqKR_Scaf98_32.32

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051191	Family	DDB1-CUL4-associated factor 12	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19860	DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0080008	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf98_32.32 global RNA-seq network