Gene detail

Detailed information of CsqKR_Scaf98_4.21 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf98_4.21	DALRD3 PROTEIN	chr7	33860631	33873170	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf98_4.21

ATGCAAACGCCCATTGGTAATGACAAATGTTTCAGGAAACATATTCTATCGTTCCTCAGCAACAAAACGATTACGTTGTCAGAAGATCCAGTTTGTTCCTGGCTGAAGAGCGAAATATCCGGAGAGAATTTCTATGGATACGGTGACATGTTTGTTCGCCTGCATAATGTCATATTAAACCCAAAACATGCTGAGGGCAGACAAGGTGGAGAGGATATATCTTCCGTAATGATGCAGCAAGAAAATTTAGAATTTCTTGTACTTAAACCTGGATATTTTTCTATACTGTGTACAAAATTAAAAGCGTATCAGTTTACTCAAAAGAATCATTTGACAGACTGGATGAAGTCTCTGGAGTGCAGGACAGATGACAAGGTCTCAGGATTAACGAAACAACGTGGTTTTACCATAGCCGTGAAAAGATACGAATACGTTAATCTCTACCACACAATGACAGACTATTACAATGCCTTTTTGATGTTACTCATATTTGACATGGATCCTAATAATACCACAATCTTGTGGATAGACGCTCATCCGTACGGAACTCTGGATCCCGTGTGGCAGACGTTGTTTTCCTCAACGATCAGGGCCGGGACGTTAAAAGAAGCTGTACTTTTCGAGAACATGGTTTGGAACGTGATGGGATACGACAGTCCGCTTAATCATCACGACAGACCTTTCGTTCCGTACCTGGAAGAGTTTAGAGAGTTTTTCTTGACACGACATGGCGTGTCCACTACAAAACCTCTCAACTGCAGCAAGCTCAACGTCATGTTCATCTGGCGCCGAGACTACGTCGCGCATCCTAGAAACCCTTCTGGTTTGGTGAAGAGGAAGATTCAGAACGAAAACGAACTGTTAGAGACGATTCGGAAAGCTGTCCCTGGCCACAACGTGACCGGTGTCCAGCTGGATTCGCTGCCTATGAAGCAACAGCTGGAGCTCATCGCCAGAACTGATGTTTTCCTGGGAATGCACGGGGCCGGACTGGCTCACACACTGTTCCTTCCTAAACACGCAGGACTGATAGAGTTGTATCCAGTATACTGGAGCGCAGCTAATCGTCACTTCCGAGCCATGGCACAGTGGCGAGGTCTTCATTATCAGTTGTGGCAAAATAGGAAACCAGAAAATGAAAAAGACAAATATTATACTTACATTCCACCAGACACCGTTTTAAAAATGTTCCTAGAAATCAAAAGAACTCTGATGTCCACATTTCAAGAATTCAAATCGCTGTTTGGAAATCTTATACGACAATCACGACATTTAAGAAATGGTGACTTCACTGTACCAAAAGGATGCATGGGAGAATTATCTTCTGAAGATGTTTCTTCCCTGCAAGACAGAATTGTGGCAGAAACTCAGACATCACTGTTACCAGTAGGCAGACTCAGCCAGGACCAAAACCACACAGTAATTCTGTTTGTGGACAGACCAAAAGCGTACAGAAATGTGATAACCCGAGTCCTCCAACAAGGTGACAAATATGGAAAGACCACTGAGAACAGCTGTCATCTTGTTTTACTGAATTCTGCTGATGTGGCTGCAGCATCTGCTGATACGGTTTCTGCATGTTCCAGCACTGTTCCAAATTTTGATGCTATCAGAAACAAAGTAGATGATCTCGTATGTGACGTGTGTTGCCACAGTTCTGATTATAAGACTGAATCATGTGAATCATCCAGAACATCTGTCTTGAGGAATTCAGCTTCAGTGTGTCCTGTCTCCACTGTGAATCCATCCTCATTTGATGACCACAACATGAAGAAGAATTCAAGTTCTACAGATCATCATGTCAAGCAAAATTCTGATTGTCTGGCAGATACGAACCATCATTTTTCTTATAATAGTAACATATCTGGTGTTTGCAGTCCAGTATCTGGTTTCCATGACAACAAAGATGACATTGTTATTATATCTAATGATGTCAGTGTTCAAGCTTCTGAAAGCAGCATCCCTGATGTTTGCAGTTTGACTTCTGGTTGCTGTGACAATGAAGATGTTGTTGTTAGTGAAACCCAGTGTATTGCAGTGAAAGATTCTGAAAGAACTTGTAGACACTGTGCTCAGGTTATCAGACATGGTGGTAAAACTGTTCATTCAAGTTTTGTAAAGACACCATTGACTCTCGCTTGTTTGAGAGCTGCTGTTATTTTACAACATACAACCCTTCTTCTTGAGGCAAATGGATATGCTGTGAAACAAGTTCCATGTGTGTCATCATCTTCTTTGTTAAGACTTTTTGAGAATCTGGGAAGTGAGTTGAGACATTCAGAAATAAACAGCAAAACTCTCAGTTCATTAATACGTTGTGCTGAGACTTCACCTTTTAGACATCACATCACAACATCAGCTACTACAACACAACCAGGACTGGATGAGGATGTAAACTATCCAGAAGGTCCATCTGATGTTTTTCTCCATGTTGCAAGACTGGAAGATTGTCTTAACAAGGAAATCCACCAGACTAAGACTATTACTTGTATACATATGGTGTCGGAAAACTCTGCGTTCATACAACAGCAAATAGATCTCATCTGGAAAATGTTCTCCACTCACTCAGTTAAACAGTTGAAGTTGGATGTTTCACAACAAGATGATGGTGGGCCTGGGGCTGAGACAAGATCCGGTCTCTTTGTTGTTTACAACTGCGCACGATTAGCTACACTCTTCAGACATTTTCAACAGGAGGTGCAAAAAGGTGTTTATCCAGAACTTCCCAGCATTTCAAGTATTAACTTTGAGCTTTTGAGAGAAGAGGAAGAATGGACATTACTTTTCAACTTCGTATCAGTCTACCCTGATGTGGTTCAGAATTCTGTTGAAGACATTGACCCACACAATTCTGATATTTATGCCAAAATCCACACACACAAAGTAGTCAACTTTCTAACAAGTTTAAGTCGAAACCTAAGTTCTTACTATGGACGAGTTCACATTCTTGGGGAAGGTAAGCCACATCTGTTCCCAGTGATGTTTGCTCGTCTCTACTTAATGAAGGCTGTACATCAAATCTTAATAAATGGACTCAGTCTATTGGGTATTCAACCTTTTAGCCAGATTTAG

Transcript

CsqKR_Scaf98_4.21

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04577	Glyco_transf_61	Glycosyltransferase 61	Family	Interproscan
PF05746	DALR_1	DALR anticodon binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008909	Domain	DALR anticodon binding	Interproscan
IPR009080	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR037380	Family	DALR anticodon-binding domain-containing protein 3	Interproscan
IPR049625	Domain	Glycosyltransferase 61, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16043	DALRD3 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004814	Molecular Function	arginine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006420	Biological Process	arginyl-tRNA aminoacylation	Interproscan
GO:0016757	Molecular Function	glycosyltransferase activity	Interproscan
GO:0106217	Biological Process	tRNA C3-cytosine methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf98_4.21 global RNA-seq network