Gene detail

Detailed information of ENSTGOP00000002138.1 in Osedax fenrisi Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSTGOP00000002138.1	SORTING NEXIN 17 AND 27	chr8	395641	425592	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

ENSTGOT00000002400

CGATTGATGAGGATTTATATAAAGATACGAATTATGAAACTGGTCCAAGAATAGTCAATGTATTTAAAACAGAAACTGGTTTTGGTTTTAATGTACGTGGACAAGTCAGTGAAGGTGGGCAGTTAAGAAGTATAAATGGGGAGCTGTATGCGCCAATGCAACACGTTAGTGCTGTGTTGAAAGGAGGCGCAGCTGAAACTGCAGGTATCGAAAAGGGAGATCGAATATTGGAAGTGAATGGCAGCAATGTTGAAGGTTCTACACATAAACAGGTTGTGGATCTGATTCGGTCTGGTGGTGATATGCTGACCTTGACGGTTGTAAGCATCGGATCAATCGGTGACCTTCAGTCTGTGGACGCGTGTAGCGACACCTCGTCCAATAGTCTGACGCTTCCCTTCGACTACTCTGAGCAGCGAACCGTTCCTATTACGATACCCTCGTACGAGAATAAGGAACAGTGTCGGCAGAGGTTCATCGTGTTTAACCTCTACATGTCTGAGAAGGTTATCTGCTCTCGGAGATACAGCGAGTTTGTGACGCTGAACTCTCAGCTACGCTCTCAGTTTATAGATTTCCAGTTTCCCCGTCTTCCCAGCAAGTGGCTGTTCCAACTCAACGAGTCGCAGCTTAACGCTAGACGGCTCGGCCTCGAACAGTTCCTCTCTAAAGTATGCAGTATCAGGGTGATATCGGACTGTGATACCATGCAACAGTTCCTCATGTGCAAGACCAATAATCATTGCAATGACCCATCACTGAATCGTAAGCTACCTGAGCTGACCACCGTCGTACTGAACATTATGATGCCTGACCACGAGATCATCTCTATCTCCGTGGACATGACCTCCACCACCAGTAAAGTGTTTGAGATACTTTGCAATGAAATAGGCATGGATGAACACACGAGATCGTACTTTGCACTCTTCGAAAGACCTCCTCATCTCTTTGACAGAAAACTCACTGAAAACGAACAGCCGTGTTCATTGGTGCAGACTGACGGCAATCAAGCGATATCATTGGCCGGTGTGCGGTTAATCGTGTCGCGGTGGCTGTTTTCTGTGGAGCTGGAGCAACGCCTCTGTGATAAGTATCGCGATGGAGACTTCATCATCGAATACTTCTATGAACAAGCTGTGGATATTGTCAGTCAGTCTTCCAACAATCATCTGATTATCTCAAAGGAAATATCGGAACGATTAAGACGTTCCCAGGAGAAATGCCATAAGGAAGAGTATCTGACCATTGTACAAAGTATTACAAACTACGCAATCGTGCGCTTCCCACATTGTCGCTGCGATGCAAGAAAGCAAGGTCATGTGATCCCAATTGTCTGCTTCGACGCGTTTAAACTTCACGCCTGTTCCACGGAAGGTGTCGTCGAGGAACAAGTGCTGGAGTTTTCGTGGTCTTCGATACAAAACTACTGCATAGATGAGGATCAACAGTTATTCCGTTACGATCTCGTCCGGCCCGATAAGAAGCCTCGATTTGTACAGATATTTACACCCTATTTTCGTTATTTGTTGGACTGTGTAGATAAAGTGTCTCTGGAACGTAACATGCTAATCAAGGAGAAAATGTAAAGATAGAATGAAGGCTCGCATTGAATCACCATTGTTATGTTTCAATATCATTACCTAATCATTgtaactactactattatataatagttatgcaGTATTAATACGAATAGAATGagttatgtttttttttatctttattttaaatttgcgttaaaataaataattttaattattcgcCAATGTATTCTAATGTTAATATAACATCTAAATTGTgtgtacaatttaaattaaatgtaaatgttatatatatatatatatatatatatatagcatttatatactttattattaatatgcgacaactatataaaatagtcaatattattttgaagccctttagaagaaacaagcatacaaatataatataaacaagaaAAGAAAACAGAAAACAAAAAtgtcttttaataaattattattattataattattattattaatatttataaaatgacgaaTGAGATATTTAGAATGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF00787	PX	PX domain	Domain	Interproscan
PF21273	SNX17-27-31_F1_FERM	Sortin nexin 17/27/31, FERM domain, F1 lobe	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000159	Domain	Ras-associating domain	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR001683	Domain	Phox homology	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR036871	Homologous_superfamily	PX domain superfamily	Interproscan
IPR037831	Family	SNX17/27/31-like	Interproscan
IPR048763	Domain	Sortin nexin 17/31, FERM domain, F1 lobe	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12431	SORTING NEXIN 17 AND 27	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005769	Cellular Component	early endosome	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:1990126	Biological Process	endocytic recycling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-