Gene detail

Detailed information of ENSWXWP00000023202.1 in Bathymodiolus septemdierum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSWXWP00000023202.1	RAS-RELATED PROTEIN RAB	3	31486236	31539999	-

Gene Structure

More details in Jbrowse Sequence

CDS

ENSWXWP00000023202

ATGAGCAAGCAAAAAAGTATTGGGACTGTGAAAGGATGTTACTTCTTGTTTAAGGTTTTGTTGGTTGGACCTCGGTTTTGTGGGAAACTAGAAATACTGCGTAGAATTCCACTTCCTGATGcggaagaaatacagacaattgGTATTGATTTTAAGATATGGAAGACAGAGGTTGATGGAAACAGAGTTAAGCTAcaaatctgGGATACATCAGGTCAAGAGAAATTTCATAATATCACCAGCACTTATTTAAGGGGAACTAAGGGGATATTATATGTGTACAATGTCTCAGACAGAGAATCATTTAATACTGTTAAAGAATACATCCAACAAACCCAAGAGAATTTACACATGTTTTCAAACTATGATAGTGTGAGTGAAATGCTGGTTGGTTTCAACAAGAGCTCAGCATCATCTAATTATGAAGTATCACTCGAAGAAGGCATCAGTTTAGCTAGAGACAAAAAGATGGTATTCATAACAATTGATGACAGTAATGATTCTGTAGTAAGAGCTTTTACCAGATTGGCTAGACAAATGATAAGGGTCAGTAAATTAAACTTAGAATATGGAGAAATTAGAATAGGACTACGAAGGGATAAAGAACAGAAATATGGTTTCAGTATTATCAAAGGCAAAGACACATGGAATATAGGTCGCGAtaaaaaaagaagaacaaaagaaaCAAGGTCTTTAGACAGGgGAATATATGTGTCATGGGTCTTACCAGATAGTCCAGCAGAAAAAGCCAACCTGAAAGTAGGAGACAGGATAATGAATTTTGATGGCCTTAGTTTTAAGGACATCCCTTTTAAGGATGCAGAGTTCTACCTTGATATTGGAGAAGCATACAACACTATTGTCATCTTTAGAGAACAAGAAGTGGAGAAATTAAGACACAAATTCTTACGATTATGGTTGTACTACCCAAGGAAGTGTGAAGTATGTAAAAGTCAAACTAAAGATACAGAGAAACCATTCGTTTGTCAAACTTGCGACTTCACCTGTCATGTTCTTTGTTTTGAAAGAATCAAAGCAGCTTGTGCAGGTCAGAAACAAATTTCTGGTCAACAAaGTTTAATGCTGAATGCTTTCCCATCACTAAAAGATTATTTGGCGAGCCAGTTTGACAGTTTATTGGTCAAGGGATGGTTTGAGTCGTATGACATGAGAATCATGGTTGTTGGACAGTTTGATGTAGGAAAGACAACTCTTGTAAAAGTTTTGATTGGAGACAAAATTCCAGAAGGTAGAAGGACAACAGATGGAATAACATTATTTGAAGGAAGATGTGGGCTTGATATTGAAGAGAGAAAATGGATCTGTATGCCAAGAGGAAATCAAAGAGACATATTGTACGGTAAAATTCTTACAAGTCCTGGTCATAAACCAACAGAAAATCCAATATCTGAAACAACATTTACTGTAAATGAAGGTGTTGATGAATTAGATTCTTCCAGTTATATACACACAGATGTGTATGATGAAAAGTTAAAGGTCACATCATCTATGGACAATAACTCAGACTCCAATCATGAAAAAAATGTGTTCAAGCAATTTGAAAAAGTAGAATACCAAGCTAAAACAGGGGAAAATGTTCTCTTATGGAAGTGCAACAAGATGAaaccaaaaataacaaaaaaattgatgaaaaaacaGATGGCAGATGCCTTAAAGAAAGGAACATACAAGGTCAGAATAGGTCGTCTGGTGTTTTGGGATTTTGGAGGCCAGTATATTTACTACACCACACATCAGACCTTCATGACTTATAGGGCTTTGTTTACTATTGTATTTGATGGTACAAAGGGTCTACACGACATCATGGATGACATCACTTGTTTTCCAGGACAACATGGAAATCCTACGCCTGCATTATTTCTTCAACACTGGGTGAACTCCATTCTGACATACTGTAAAAATATAGAGACAGGATATCCACAAATTTTGTTTGTTGCTACTCACAAAGATGAAATTCCAGAGAATCTTGTTGAAGAGACTCGAAAGACTTTATATGAAGGAGTAGAGCATATATTCAAGGATCATGAAGGCTACAAACATCTGGTTTTAGAACATCGTCTATTTGTCAATGCTACAGATCCACATGATCCAGAACTTGAAACATTGAAGAAAGTCATCACTGATCTCACCTTCTCTCATCCATGTTGGGGAGAAAAGATACCAAATGCTTGGGTCCCTCTGGAACTGGAGATCTCTAACCTAGTCTCAGAAGGCAAGAACTTGTTGTCCTTGGCTGAGTTAAAAGCTCTGAATCAAGCCAGTGAAGTGACTGTGTTGACTGGAGGACAGCTAGATGTATTCCTTAAAGTCAAGCACTCATTAGGAAACATTGTGTATTTTGATATACCACATCTCAGAGAGTATGTCATTATAAATCCATTATATATGGTGGACGTGATGAGATCATTTGTAACAGacgaACAGTTCTGGCCTGCAGATAAAAGACTTAAAGATACATTTCAGGGTATGACTAAACATGGCATTATCCAAAAGATTGATCTGTTTAGGATCTGGAAAAGAAGAGAATTTTCTAACATATGGCCGTATAGGGAATTTATTTTTGACATGCTTATTCATCTAGACATTTTGTCTGAGCAGAGACGTTATGACAGAGAAACGGGAAGTAGACTTCCAGTTAAAGACTACTTTGTTCCTTGCATGCTGACAGCGAGAAACGAGTCCAATTATTTCCAGAAAGAGTGTACCTCCAACAAATCCATGTGCCTTGCCTTTACATTCAAAGGCACTGTCATTCCACCCGCATTACCAAATCGTCTCATCAGCGCTTGTCTCAGTATATGGGCTTTGAAAGAATATAATGGTCAGAAATTGCTTTTTCCAGGATTTGTAGCACTTGCTGTTGATAAATCACACGACCTAATTGTGTGTGTGCAAGATAATAAGATATTGGTGTACATTGTACACAAACGCACAAGAGACCTGATCATGCCAGACGTAGCATTATGTGTAAGAGAATGCCTATACACAACATTACAAAGGATTTCTGAGTTTTATCAATCCACAATTGAAGACAAAAGCTCACAGAAACTTCCATTCCACATAGAATTTGCCTGTTCTGAAATGACCTGTTTTATTCCTGAGAAAAATGCATTAGAAATGGACTGTTGGATATGTCCTTGTCACCTGTATAAACATGGAAGACATTTTTGGAATATCTGGATATCTAATAGGTTTAATGAAGAATGTGACAGAGACTGTCCTGGTTTAACTGAAGATGCTCTGTGTCAACATCCAAGTGACAGTGAGCTACGGCGAATTTCGGTACAGTTTGATCCCAGTGTCATGTATGAACTTGCCATCCATCTTGGAACCACCATCAAAGAATGGAAAACAGTAAGGTATGACCATCCAGAAAACATTGAGGATGTCATGTTCTTGGTATTATGGAAGTGGAAGGAGACAACAAAAGAAACATTTCGTGAACTTACACAAGCTGTAGTATGTGTTCAAGATAATACTCATAAATTATGTATGgTAAGAAAGATAAGAAAAATAGAAACATgTATTCCAGATGAAATCTTAGATGCCTATCCAACAGATGAAATTTTGGATGCCTTAGCTCCCCTTGTTGGCCTCAAATCATTCCATCTTGGAATAGAGCTTGGTCTGAATGTAGAACTTCTTCAGACCATTCAGTACAACCATAGAGGAGACCTGATCTCACAGATCAGGGAGATATTATACATCTGGAGAAGTGACGATAGTGTGAAACCTACAATAGCCACGTTAGCTCAGGCTCTGACAAATATTGAGAAAGGAACTCGTTGTTTGGAGAATGTAATTGATAATGTTGGTGTGAAATACGAGTCGAGAGACCAGACTGACACTGTCAAAGATGGAGAACAAAACAAGATCAAGAGATTTTTCAAGCGACTCCAGATTAATTTATAA

Transcript

ENSWXWP00000023202

ACCATACTTTAATCCCCTGTGTAAACTGAGTTTGAGCGATTGGATGGATGGAGTGTTCACCTATCATCTCATCAGGAAACTAACATGAAAAATGAGCAAGCAAAAAAGTATTGGGACTGTGAAAGGATGTTACTTCTTGTTTAAGGTTTTGTTGGTTGGACCTCGGTTTTGTGGGAAACTAGAAATACTGCGTAGAATTCCACTTCCTGATGcggaagaaatacagacaattgGTATTGATTTTAAGATATGGAAGACAGAGGTTGATGGAAACAGAGTTAAGCTAcaaatctgGGATACATCAGGTCAAGAGAAATTTCATAATATCACCAGCACTTATTTAAGGGGAACTAAGGGGATATTATATGTGTACAATGTCTCAGACAGAGAATCATTTAATACTGTTAAAGAATACATCCAACAAACCCAAGAGAATTTACACATGTTTTCAAACTATGATAGTGTGAGTGAAATGCTGGTTGGTTTCAACAAGAGCTCAGCATCATCTAATTATGAAGTATCACTCGAAGAAGGCATCAGTTTAGCTAGAGACAAAAAGATGGTATTCATAACAATTGATGACAGTAATGATTCTGTAGTAAGAGCTTTTACCAGATTGGCTAGACAAATGATAAGGGTCAGTAAATTAAACTTAGAATATGGAGAAATTAGAATAGGACTACGAAGGGATAAAGAACAGAAATATGGTTTCAGTATTATCAAAGGCAAAGACACATGGAATATAGGTCGCGAtaaaaaaagaagaacaaaagaaaCAAGGTCTTTAGACAGGgGAATATATGTGTCATGGGTCTTACCAGATAGTCCAGCAGAAAAAGCCAACCTGAAAGTAGGAGACAGGATAATGAATTTTGATGGCCTTAGTTTTAAGGACATCCCTTTTAAGGATGCAGAGTTCTACCTTGATATTGGAGAAGCATACAACACTATTGTCATCTTTAGAGAACAAGAAGTGGAGAAATTAAGACACAAATTCTTACGATTATGGTTGTACTACCCAAGGAAGTGTGAAGTATGTAAAAGTCAAACTAAAGATACAGAGAAACCATTCGTTTGTCAAACTTGCGACTTCACCTGTCATGTTCTTTGTTTTGAAAGAATCAAAGCAGCTTGTGCAGGTCAGAAACAAATTTCTGGTCAACAAaGTTTAATGCTGAATGCTTTCCCATCACTAAAAGATTATTTGGCGAGCCAGTTTGACAGTTTATTGGTCAAGGGATGGTTTGAGTCGTATGACATGAGAATCATGGTTGTTGGACAGTTTGATGTAGGAAAGACAACTCTTGTAAAAGTTTTGATTGGAGACAAAATTCCAGAAGGTAGAAGGACAACAGATGGAATAACATTATTTGAAGGAAGATGTGGGCTTGATATTGAAGAGAGAAAATGGATCTGTATGCCAAGAGGAAATCAAAGAGACATATTGTACGGTAAAATTCTTACAAGTCCTGGTCATAAACCAACAGAAAATCCAATATCTGAAACAACATTTACTGTAAATGAAGGTGTTGATGAATTAGATTCTTCCAGTTATATACACACAGATGTGTATGATGAAAAGTTAAAGGTCACATCATCTATGGACAATAACTCAGACTCCAATCATGAAAAAAATGTGTTCAAGCAATTTGAAAAAGTAGAATACCAAGCTAAAACAGGGGAAAATGTTCTCTTATGGAAGTGCAACAAGATGAaaccaaaaataacaaaaaaattgatgaaaaaacaGATGGCAGATGCCTTAAAGAAAGGAACATACAAGGTCAGAATAGGTCGTCTGGTGTTTTGGGATTTTGGAGGCCAGTATATTTACTACACCACACATCAGACCTTCATGACTTATAGGGCTTTGTTTACTATTGTATTTGATGGTACAAAGGGTCTACACGACATCATGGATGACATCACTTGTTTTCCAGGACAACATGGAAATCCTACGCCTGCATTATTTCTTCAACACTGGGTGAACTCCATTCTGACATACTGTAAAAATATAGAGACAGGATATCCACAAATTTTGTTTGTTGCTACTCACAAAGATGAAATTCCAGAGAATCTTGTTGAAGAGACTCGAAAGACTTTATATGAAGGAGTAGAGCATATATTCAAGGATCATGAAGGCTACAAACATCTGGTTTTAGAACATCGTCTATTTGTCAATGCTACAGATCCACATGATCCAGAACTTGAAACATTGAAGAAAGTCATCACTGATCTCACCTTCTCTCATCCATGTTGGGGAGAAAAGATACCAAATGCTTGGGTCCCTCTGGAACTGGAGATCTCTAACCTAGTCTCAGAAGGCAAGAACTTGTTGTCCTTGGCTGAGTTAAAAGCTCTGAATCAAGCCAGTGAAGTGACTGTGTTGACTGGAGGACAGCTAGATGTATTCCTTAAAGTCAAGCACTCATTAGGAAACATTGTGTATTTTGATATACCACATCTCAGAGAGTATGTCATTATAAATCCATTATATATGGTGGACGTGATGAGATCATTTGTAACAGacgaACAGTTCTGGCCTGCAGATAAAAGACTTAAAGATACATTTCAGGGTATGACTAAACATGGCATTATCCAAAAGATTGATCTGTTTAGGATCTGGAAAAGAAGAGAATTTTCTAACATATGGCCGTATAGGGAATTTATTTTTGACATGCTTATTCATCTAGACATTTTGTCTGAGCAGAGACGTTATGACAGAGAAACGGGAAGTAGACTTCCAGTTAAAGACTACTTTGTTCCTTGCATGCTGACAGCGAGAAACGAGTCCAATTATTTCCAGAAAGAGTGTACCTCCAACAAATCCATGTGCCTTGCCTTTACATTCAAAGGCACTGTCATTCCACCCGCATTACCAAATCGTCTCATCAGCGCTTGTCTCAGTATATGGGCTTTGAAAGAATATAATGGTCAGAAATTGCTTTTTCCAGGATTTGTAGCACTTGCTGTTGATAAATCACACGACCTAATTGTGTGTGTGCAAGATAATAAGATATTGGTGTACATTGTACACAAACGCACAAGAGACCTGATCATGCCAGACGTAGCATTATGTGTAAGAGAATGCCTATACACAACATTACAAAGGATTTCTGAGTTTTATCAATCCACAATTGAAGACAAAAGCTCACAGAAACTTCCATTCCACATAGAATTTGCCTGTTCTGAAATGACCTGTTTTATTCCTGAGAAAAATGCATTAGAAATGGACTGTTGGATATGTCCTTGTCACCTGTATAAACATGGAAGACATTTTTGGAATATCTGGATATCTAATAGGTTTAATGAAGAATGTGACAGAGACTGTCCTGGTTTAACTGAAGATGCTCTGTGTCAACATCCAAGTGACAGTGAGCTACGGCGAATTTCGGTACAGTTTGATCCCAGTGTCATGTATGAACTTGCCATCCATCTTGGAACCACCATCAAAGAATGGAAAACAGTAAGGTATGACCATCCAGAAAACATTGAGGATGTCATGTTCTTGGTATTATGGAAGTGGAAGGAGACAACAAAAGAAACATTTCGTGAACTTACACAAGCTGTAGTATGTGTTCAAGATAATACTCATAAATTATGTATGgTAAGAAAGATAAGAAAAATAGAAACATgTATTCCAGATGAAATCTTAGATGCCTATCCAACAGATGAAATTTTGGATGCCTTAGCTCCCCTTGTTGGCCTCAAATCATTCCATCTTGGAATAGAGCTTGGTCTGAATGTAGAACTTCTTCAGACCATTCAGTACAACCATAGAGGAGACCTGATCTCACAGATCAGGGAGATATTATACATCTGGAGAAGTGACGATAGTGTGAAACCTACAATAGCCACGTTAGCTCAGGCTCTGACAAATATTGAGAAAGGAACTCGTTGTTTGGAGAATGTAATTGATAATGTTGGTGTGAAATACGAGTCGAGAGACCAGACTGACACTGTCAAAGATGGAGAACAAAACAAGATCAAGAGATTTTTCAAGCGACTCCAGATTAATTTATAATTATGCATTTTTCCATATTTTAGATGATTATTGAACTAGAGACCTTTCGATAAGTTCTTAATGATTTACATTTTCTCACATAATTATGAGAGTCAGAGACAGGATAATACAATGGTTTCTAGGATGCGAGATTAGCTTTTCTCACTGCTTGAATAAAGTAGACTGTTAATTTAGGTGAACAAGATTTTTCTATCTGATCCAGGTtcctgggtaagacaagctacacaagCGTTTTTCTTCAAAATTGTTTTTCATTGCTTaagtaaattgttgatttatcgatatacatccgtgtcttggcagtatttttaatgtatttcataataaaatagaTAGACCGTATCCTTAAATGACAAACATTTATTTGACCCACATTTAACATTTTCCAGAACTACTTTTCTTAAAGTTTGGGTGGGGTGCccaatcaccactaatgttgttagtttgaatcccgctcgtggcgaggtttaatcgatacaacataatgtgattaaagtttgtcagtgacttgcagcaggtctgtggtcatctctgggtactcaggtttcctccaccaataaaactgaccgccacaatataactgaaacattgttgaaagtggggttaaacac

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR002219	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR046349	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR050227	Family	Ras-related protein Rab	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47977	RAS-RELATED PROTEIN RAB	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-