Gene detail

Detailed information of ENSZWYP00000001106.1 in Lamellibrachia columna Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSZWYP00000001106.1	DENN DOMAIN-CONTAINING PROTEIN 4	chr11	47871151	47929720	-

Gene Structure

More details in Jbrowse Sequence

CDS

ENSZWYT00000001106.1

ATGTCTCGGTTGGCTGACTACTTCGTCGTTGTTGGATATGACCACGGGAAGGAACGGAGTGGTGAAAGCTCAGGCCAAATCATCCAGCGCTTCCCACAGACTGACTGGCCGCACTGCCCCTTTACACAGGGTCTCGAACTGTTCTGCCAGCCATCAGGATGGTACTTGTCAACCCAGAAGCATCAGCCAACATTCTTTGTTGCCGTGCTAACGGACATTGATGCCGAACGCCACTACCTGGCCTGCCTCACTTTCAATGAGGACGTTGCCATAGCACCAAGCAAGTTCGACGAGGCTGAGGATTCAGAAGACCATGATGCAACGCTGGTGCGGGCAGCAAAGATGTATGCACCAAAGAGTCTCGTGCTTGTGTCACGGCTCGATTGCTTCGAAGTCTTTCGTAACTGCCTTGGCCTCATCTACACCGTCTACATAGAGAACATGGATGTAGAACTAGAAACTCTTATCGGCAACATCCTCGGCTGCATACAAGTGCCTCCACCAGGTGGGCCGCAGGTAAGGTTCTCTATTGGAGCAGGTGACCGCCAGGCCATGCAGCCCCCTGTAGTGCCCACACTACCCGTCACTCATGTTGCCGTCGCTATGCTCTTCCAGCAGTTGGGTATTTCCAACACTCTCTCTGTGTACTGCGCCGCTCTGACAGACCACAAAGTCCTCTTCCACTCCCAGAGCTACACACGACTGACAGACGCCAGCCATGCCTTGACGGCACTCATGTATCCCCTCAAGTACAGTTACGTTTACATCCCCCTACTACCGGCCGCCCTGCTAGAGGTACTCAGCACCCCAACCCCATTTGTGGCCGGGGTCCACACATCCCTCAGACCTGACTTCTCTGATCTGCTGGATGTCATAGTCGTAGACCTGGACGGAGGCAGTATCCGTGTCCCGGAGCATGTGCAACTGGCCCTCATGCCTGATCCCATACACTTGCACATCACACAGGCTCTCAACATGGTGCTTCACCCGGAGTTGCTGCAGGCAGACATGGCGTTTACACAGGCTTCCACAAAACCAGTACTGCTGGACATGTTGGACAAGTCTATCCGGGCGATCTTCCTGCGCTTCTTCGCCGAGCTCTTCTTTGGCTATCGATCATGTCTTACCCTCATTCGCATCCACCCTGAACCCTTCATTGCCTTCCACAAGGCCAACTTCCTGGGCCATCGAGGACTCGTTGAGGATGACTTCACATTGAAAGTGCTCGATTCTATGTGCTTCAACACGTTTGTGGCGGAACGTGGACCTCCATACCGGGCCTGTGATATATTTGATGAAGTGTTTGCCAGTATGCAGGACATGTTGAAAACGGAGGAGAACACGGCTGAGAGACTACAACACAACATTGAAGACCTGGCTCAACAGCTCTACTTGAATGAAAACCCCAACCTGCAGCCTTATGTGCAGAAGGTGCCAAAGCCCACAGAGGGAGCATACACACGGGTGCACCAGCCTCCCTTTCCCACCATCGACAAATCCCGGGTTCAGGAGATTATGGATGAAGGAATGGCCAAGCACAGTGTCAAGTCCAAACTGAACCAGGTTCGACTGCAGCAGCCGCGCATTGTTCCAATGGGGCCACACGTGATGTCGGCGCGTGATCACTCATCCGTAGTCAGCACCAATGTCCGGCGGCTCGAGGTGCTGCAAAACTGTGTCAACTTCATATTCGAGAACAAGATATCAGATGCCAGAAAGATCTTCCCCGCGGTGTTGCGAGCTCTCAAAAGCAAGATCGCAAGACAGGCCCTGGTGAATGAACTGTGTTTCCACATCCAGAGCAACAGGGCCATGTTGGAGCATCAACAGTTTGATCTTGTTGTCAGACTACTCAACTGTGCTCTACAGAATGACTCATCGATGGACGAGAATGGAATAGCAGCTGCCATTCTACCTCTGGCTACAACCTTCTGTCGAAAACTGTGTACGGGCGTGATCCAGTTCGCATACACGTGTGTACAGGAGCATGCGGTGTGGTCGAACCAGCAGTTCTGGGAGGCGACATTTTACCAGGACGTGCAGAAACAGATCCGCCAGTTGTACGCTCCCAAGTATGAGGAGAACTTACTGGAGGACACTTCCTTCACTGGCTCCCCCGCACACAGGGAGGAACTGAACCCTGGTTGGAGTCGGGAGTCGTATCGGGGGTCAGGCACGCCGGACTTCAAGCGGCGGTCAGCGATCTCCATGTCTGTGTTCAGGCCAAAGGAGATCAGCGCACTCGAGATAGCCGCAGAGCAGCTACGTGTGTGGCCAAGTCTGACGCCTGAGCAGCAGGAGGAGTTGATCAACAACGAGGAGTCGACAGTCTACTGCCAGGCGATCCACTACAGCAACCGTATGGTCTACATGCTCATGCCACTAGACACCAGCAAGAGTGTGCGTGAGGGAACAGGCGGAGGCTCGGAGGAGAACGCTAGCAGCACCATCACAACAAGTGCGGCAGAGAGTGACAGTTTTGACGCGGAGAGTGGCTTTGACGAGCAGGAGTTGAATGAAGTAGGCGCCTCAGTCATACGCTTCGTGTCGCGGTTTGTGGACAAGGTGTGCGCTGAGAGCGGAGTGACGGCCGACCACATAAAAGCTCTGCATCAGATGATACCTGGTGTTGTGGCGATGCACATGGAGACACTGGAGGCTGTTCACAGGGAGAGCAAGAGACTGCCTCCCATACAGAAGCCAAAGATCCTTACTCCCATCCTTCTCCCTGGGGAAGAGATAGTGATGGAGGGACTGCGGGTGTACCTGCTTCCTGACGGCAGGGAAGTGGGAACGGGCTCCATCGGAGGGCCGGTGCTCTTGCCGGCTGAGGGAGCCATCTTCCTAACTACATACCGCATTATATTTAAAGGCACGCCATGCGACTTGCTTGCATGCGAGCAGATCGTGTGTCGGAGCTTTCCGGTGTCAACCTTGACCCGGGAGAAGAAGGTCAGCGTGCAGTATCTCACACACATTGACCTCTGGCTGCAGGAAGGACTGCAGCTGCGCTCAAACACATTCCAGTTATTAAAGGTAGCATTTGATGAAGAGGTGAGCTCGGATGATATAGAGACGTTACGGAAACTTGTCAACAAAGTACGCAATCCACTCAGTGTGATGAATACGTTTGCATTCACGGGCGTCATCGTAGCACAGCCTTCCCAGCATGCAAAACACAAAGAGAAGAATGCTTCACTCAAGGGCTTTGCCAAGAGGACACTGATGAAAACAGCGAGGAAGGCGGGCCTGAAGTCCAAGGAGGTATCCCAGAAGCGCAAGTACATCATGCCGACCCCGCCCATGTCCCGGCGCTCCTTCAGTCTGCAGCAGGAACCACTGCGGGACCGGCCCGCTAGCATCTGCTGTGAGGAGGAACTCTCAATCATCGAGGAGCAGGAGATAACGCATGCTATTGAGGCAGACGCGAAGAACGTAGAACGCCTGGCGACTCGCAGCTACTGCCGCGACTACTGGCGCCTCGGTCTCGGCTCACTGTCGAGTGGACACAGCAACCATGCCAAGTCAGATCCCTGCAGACTCAGCCTGGTCAACACCATGTATACTGTGTGTCGAAGTTACCCTGCAGTGCTGGTTGTGCCTCAATCCATTTCTGACGAGAGTATACGAAAGTTTGCTCGAACACATAGACAATACAGGTTTCCAGTAATAACATGGCGGCACACGCGTACCAAGGCACTACTACTGCGATCCAGCGGCTTCCACAGCAAGAGTGTGATGGGAATGCTTAAGACACACACCACACATCACACCACTCCAACAGGTCTGACAATGTTTGATGATAGATTATTTCAAAAATCTTAA

Transcript

ENSZWYT00000001106

cGTATTAAAACattagtattttaatatatttgtttagttagcaattataaacaaattgttCCATCAGCCACTTCCCTGCAGTAAGTAACGCAGTAGCAGCCAGGTGTCGCCGGTGTCTCAAGCAGCTACCGCTTTAGGACAACAGGGCGCGCAGCGGATTCGTTGCAAGTCAAAATGGCTACCAGGAAAATGAGAGGCTTGGATGAGTAGGAAATTTACGGATTATTACCATGTCTCGGTTGGCTGACTACTTCGTCGTTGTTGGATATGACCACGGGAAGGAACGGAGTGGTGAAAGCTCAGGCCAAATCATCCAGCGCTTCCCACAGACTGACTGGCCGCACTGCCCCTTTACACAGGGTCTCGAACTGTTCTGCCAGCCATCAGGATGGTACTTGTCAACCCAGAAGCATCAGCCAACATTCTTTGTTGCCGTGCTAACGGACATTGATGCCGAACGCCACTACCTGGCCTGCCTCACTTTCAATGAGGACGTTGCCATAGCACCAAGCAAGTTCGACGAGGCTGAGGATTCAGAAGACCATGATGCAACGCTGGTGCGGGCAGCAAAGATGTATGCACCAAAGAGTCTCGTGCTTGTGTCACGGCTCGATTGCTTCGAAGTCTTTCGTAACTGCCTTGGCCTCATCTACACCGTCTACATAGAGAACATGGATGTAGAACTAGAAACTCTTATCGGCAACATCCTCGGCTGCATACAAGTGCCTCCACCAGGTGGGCCGCAGGTAAGGTTCTCTATTGGAGCAGGTGACCGCCAGGCCATGCAGCCCCCTGTAGTGCCCACACTACCCGTCACTCATGTTGCCGTCGCTATGCTCTTCCAGCAGTTGGGTATTTCCAACACTCTCTCTGTGTACTGCGCCGCTCTGACAGACCACAAAGTCCTCTTCCACTCCCAGAGCTACACACGACTGACAGACGCCAGCCATGCCTTGACGGCACTCATGTATCCCCTCAAGTACAGTTACGTTTACATCCCCCTACTACCGGCCGCCCTGCTAGAGGTACTCAGCACCCCAACCCCATTTGTGGCCGGGGTCCACACATCCCTCAGACCTGACTTCTCTGATCTGCTGGATGTCATAGTCGTAGACCTGGACGGAGGCAGTATCCGTGTCCCGGAGCATGTGCAACTGGCCCTCATGCCTGATCCCATACACTTGCACATCACACAGGCTCTCAACATGGTGCTTCACCCGGAGTTGCTGCAGGCAGACATGGCGTTTACACAGGCTTCCACAAAACCAGTACTGCTGGACATGTTGGACAAGTCTATCCGGGCGATCTTCCTGCGCTTCTTCGCCGAGCTCTTCTTTGGCTATCGATCATGTCTTACCCTCATTCGCATCCACCCTGAACCCTTCATTGCCTTCCACAAGGCCAACTTCCTGGGCCATCGAGGACTCGTTGAGGATGACTTCACATTGAAAGTGCTCGATTCTATGTGCTTCAACACGTTTGTGGCGGAACGTGGACCTCCATACCGGGCCTGTGATATATTTGATGAAgtGTTTGCCAGTATGCAGGACATGTTGAAAACGGAGGAGAACACGGCTGAGAGACTACAACACAACATTGAAGACCTGGCTCAACAGCTCTACTTGAATGAAAACCCCAACCTGCAGCCTTATGTGCAGAAGGTGCCAAAGCCCACAGAGGGAGCATACACACGGGTGCACCAGCCTCCCTTTCCCACCATCGACAAATCCCGGGTTCAGGAGATTATGGATGAAGGAATGGCCAAGCACAGTGTCAAGTCCAAACTGAACCAGGTTCGACTGCAGCAGCCGCGCATTGTTCCAATGGGGCCACACGTGATGTCGGCGCGTGATCACTCATCCGTAGTCAGCACCAATGTCCGGCGGCTCGAGGTGCTGCAAAACTGTGTCAACTTCATATTCGAGAACAAGATATCAGATGCCAGAAAGATCTTCCCCGCGGTGTTGCGAGCTCTCAAAAGCAAGATCGCAAGACAGGCCCTGGTGAATGAACTGTGTTTCCACATCCAGAGCAACAGGGCCATGTTGGAGCATCAACAGTTTGATCTTGTTGTCAGACTACTCAACTGTGCTCTACAGAATGACTCATCGATGGACGAGAATGGAATAGCAGCTGCCATTCTACCTCTGGCTACAACCTTCTGTCGAAAACTGTGTACGGGCGTGATCCAGTTCGCATACACGTGTGTACAGGAGCATGCGGTGTGGTCGAACCAGCAGTTCTGGGAGGCGACATTTTACCAGGACGTGCAGAAACAGATCCGCCAGTTGTACGCTCCCAAGTATGAGGAGAACTTACTGGAGGACACTTCCTTCACTGGCTCCCCCGCACACAGGGAGGAACTGAACCCTGGTTGGAGTCGGGAGTCGTATCGGGGGTCAGGCACGCCGGACTTCAAGCGGCGGTCAGCGATCTCCATGTCTGTGTTCAGGCCAAAGGAGATCAGCGCACTCGAGATAGCCGCAGAGCAGCTACGTGTGTGGCCAAGTCTGACGCCTGAGCAGCAGGAGGAGTTGATCAACAACGAGGAGTCGACAGTCTACTGCCAGGCGATCCACTACAGCAACCGTATGGTCTACATGCTCATGCCACTAGACACCAGCAAGAGTGTGCGTGAGGGAACAGGCGGAGGCTCGGAGGAGAACGCTAGCAGCACCATCACAACAAGTGCGGCAGAGAGTGACAGTTTTGACGCGGAGAGTGGCTTTGACGAGCAGGAGTTGAATGAAGTAGGCGCCTCAGTCATACGCTTCGTGTCGCGGTTTGTGGACAAGGTGTGCGCTGAGAGCGGAGTGACGGCCGACCACATAAAAGCTCTGCATCAGATGATACCTGGTGTTGTGGCGATGCACATGGAGACACTGGAGGCTGTTCACAGGGAGAGCAAGAGACTGCCTCCCATACAGAAGCCAAAGATCCTTACTCCCATCCTTCTCCCTGGGGAAGAGATAGTGATGGAGGGACTGCGGGTGTACCTGCTTCCTGACGGCAGGGAAGTGGGAACGGGCTCCATCGGAGGGCCGGTGCTCTTGCCGGCTGAGGGAGCCATCTTCCTAACTACATACCGCATTATATTTAAAGGCACGCCATGCGACTTGCTTGCATGCGAGCAGATCGTGTGTCGGAGCTTTCCGGTGTCAACCTTGACCCGGGAGAAGAAGGTCAGCGTGCAGTATCTCACACACATTGACCTCTGGCTGCAGGAAGGACTGCAGCTGCGCTCAAACACATTCCAGTTATTAAAGGTAGCATTTGATGAAGAGGTGAGCTCGGATGATATAGAGACGTTACGGAAACTTGTCAACAAAGTACGCAATCCACTCAGTGTGATGAATACGTTTGCATTCACGGGCGTCATCGTAGCACAGCCTTCCCAGCATGCAAAACACAAAGAGAAGAATGCTTCACTCAAGGGCTTTGCCAAGAGGACACTGATGAAAACAGCGAGGAAGGCGGGCCTGAAGTCCAAGGAGGTATCCCAGAAGCGCAAGTACATCATGCCGACCCCGCCCATGTCCCGGCGCTCCTTCAGTCTGCAGCAGGAACCACTGCGGGACCGGCCCGCTAGCATCTGCTGTGAGGAGGAACTCTCAATCATCGAGGAGCAGGAGATAACGCATGCTATTGAGGCAGACGCGAAGAACGTAGAACGCCTGGCGACTCGCAGCTACTGCCGCGACTACTGGCGCCTCGGTCTCGGCTCACTGTCGAGTGGACACAGCAACCATGCCAAGTCAGATCCCTGCAGACTCAGCCTGGTCAACACCATGTATACTGTGTGTCGAAGTTACCCTGCAGTGCTGGTTGTGCCTCAATCCATTTCTGACGAGAGTATACGAAAGTTTGCTCGAACACATAGACAATACAGGTTTCCAGTAATAACATGGCGGCACACGCGTACCAAGGCACTACTACTGCGATCCAGCGGCTTCCACAGCAAGAGTGTGATGGGAATGCTtaagacacacaccacacatcacACCACTCCAACAGGTCTGACAATGTTTGATGATAGATTATTTCAAAAATCTtaagacacacaccacacatcacACCACTCCAACAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02141	DENN	DENN (AEX-3) domain	Family	Interproscan
PF02893	GRAM	GRAM domain	Domain	Interproscan
PF03456	uDENN	uDENN domain	Domain	Interproscan
PF06602	Myotub-related	Myotubularin-like phosphatase domain	Domain	Interproscan
PF12335	SBF2	Myotubularin protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001194	Domain	cDENN domain	Interproscan
IPR004182	Domain	GRAM domain	Interproscan
IPR005112	Domain	dDENN domain	Interproscan
IPR005113	Domain	uDENN domain	Interproscan
IPR010569	Domain	Myotubularin-like, phosphatase domain	Interproscan
IPR022096	Domain	SBF1/SBF2 domain	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR037516	Domain	Tripartite DENN domain	Interproscan
IPR043153	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan
IPR051696	Family	DENN Domain-Containing GEFs	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12296	DENN DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0031410	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0032483	Biological Process	regulation of Rab protein signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-