Gene detail

Detailed information of ENSZWYP00000024731.1 in Lamellibrachia columna Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSZWYP00000024731.1	RNA BINDING PROTEIN	chr6	4571272	4596697	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

ENSZWYT00000024731

TTCGCCGGCAACCAAAGTTTTTACGTTTTGCGATCGGGGCGCTttaattttaacattttaattattgtgTGTTATTAAGACGTGCCAATATATACATTTCCTTTCCTCTTGGTATATACAGTGTGAGCATAAACATTGTGGACTTGACTAGACGTCATGAGTGGAGCCAAAGATTGGGCGAAGCTGAACATAGCCACATTGAAGCTGGAACTGGCAGACCGAAATCTGGATGTGACGGGGAAGAAGGTAGACCTTGTGACCCGACTGGAACAGTACGAATGTGCGTCTAAGCAGAATTTAGCATCGGGGGATGGACCTGGCCTGTCAGAGGACAGTAAACACCATGACTCTCATGACACCACAGGGGAAGTGTTCAGTGTTGACGACCTCCAGTTGGTGGATGAGTTCATTGATGAAGACTACTTGGAAGAGGAGGAGAAGATGGAAGGATTGGATAAGGAGAACAGGGATGACGGGAAGCCAGAGCAACTGAAGACCTATGATGTGGCCACCCTTTACATCCCAAAAGTTAATGAAATGCACAAAGATCTGCAGGTGGCTCAGAAGTTCCGTGTTCTCTACATCTACCCGTTGCGGACAGAGATGATGGCCGACCCAGCCGTACAGATCCACTTCCTGCGCTGTTCCTCAGTTCTTTGCAAGTTCTACCCAACTGAGACGCCTGACGGCTATATATCTGAAGGCTATGTGATCTTGAGGTTTGAGTTCAGCGAGGATGCTCTGACTGCTATGGAAGAGTTGACAAACATTCTGCCAGCCAATGTCCACATCAAAGTGCGTCAGCTCGGTCAGACACACATGGACGTGCTCAGTGGCATTATCCGTACTGAGCCGAAGGGGGTAGAAATCTGGCTGAAAGacaataaaaatacaaaaatagTATTTGTCGGCAATTTGCCACCAACGGCGACGGAGGCAGCACTGAAGGAGATCTTTACTGGAGCCACCATCATACGTATTGCCCGCGAGGACGACTCCAGCTCGAAAGGCTACGCCATTGTGGGTTACGACAACTCAAAGGACGCAGAGCAGGCAGCAGAGGAACACTCTTCTGCCGTACTTGACAGCTATGTGCTCGCTGTCTTCCACTTTCCTGCCACCCCCAAGCGCCCTGCAGCTGAGAAAGAGCAGATGGAGAGACTGAAGAAAACTGAGAAGGATGAGAAACAAGAGAGTGTAAAGTCAGAAGAGCCAGTGAAGAAGGAATCTGTGACACCTCAAATGAAGAAAGGAGTCACACCTTTGAAGAAGTCTGGTGTAACACCACAGAAACAAGAGAACACTGAGTCAAAGATTACTCCAGGGCAGATCAAGAGGGAATCGTCAACTCCTCAGAGGAATGCTACCCCTGGTCTGAAGAAGCCTGTGACACCCCAAGAAGGGGTACCCAAGAAGGACTCAGTCACTCCAAAGGTAAAGAAAGAATCCCCAACACCCCAGGCAAAGAAGAACGGACAAGACACAAAGAAAACAGGTGCGAAGCCGACAGGGAAGGTGAACAACAAGTCTCCGGCAGCTGCATCCCAAAAGACAGGTGGGGTTAGGACGGCGGAGAAACATCAAGCAGTGGGTGCCGGGAGACAGGGGCCAAGACAGACACAGAGGCTGGCCCAGAAACGACCACGGGCCAGGGGAGGCAACAAACCTGGGTTTCCACAGCAGCAACGGCGTGTTGGTGGTAAGTGGGAGCAGACCAACGACAACAAGGGGATGAGAGGAAACCAAACGCAACTGCTACGTTCTCCGTATCAACGCATGCAGAAGAAACAGGGATTATGGGAACAAGCCCTGGAGAGAAGACAGGAACAGAGGACAGGGGGTGGTATGCAGAGACAGTCCACTTGGCGCAGCCAACAGTTTGCCAATGGCAACAAGAGGCAACTACCCTACAATTCGGGGGGCGTGGATGACAAGAGACGTCGCATGGAACAGACACCTTATGGCAGTCGACAGAGCTCCTACGAACCACGGGCCCCAAGTCTACTGGATATGTCCATCACGAAGCGGATGGCTCAACAAATGTCACCAAACTCAGGTTTTTTACATGGAGGAGCTGGCCTAGGACAAGGCGGAGGAATGGGAGGTGGGATGGGAATGGGACAGGGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF02037	SAP	SAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR003034	Domain	SAP domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036361	Homologous_superfamily	SAP domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24012	RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0008143	Molecular Function	poly(A) binding	Interproscan
GO:0008266	Molecular Function	poly(U) RNA binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-